Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3437 and Dsui_3438 are separated by 13 nucleotides Dsui_3438 and Dsui_3439 are separated by 145 nucleotides
Dsui_3437: Dsui_3437 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,690,225 to 3,693,257
_3437
Dsui_3438: Dsui_3438 - beta-hydroxyacid dehydrogenase, 3-hydroxyisobutyrate dehydrogenase, at 3,693,271 to 3,694,170
_3438
Dsui_3439: Dsui_3439 - methyl-accepting chemotaxis protein, at 3,694,316 to 3,695,965
_3439
Position (kb)
3693
3694
3695 Strain fitness (log2 ratio)
-2
-1
0
1 at 3692.409 kb on - strand, within Dsui_3437 at 3692.487 kb on + strand at 3692.526 kb on - strand, within Dsui_3437 at 3692.545 kb on - strand, within Dsui_3437 at 3692.605 kb on - strand, within Dsui_3437 at 3692.669 kb on - strand, within Dsui_3437 at 3692.700 kb on - strand, within Dsui_3437 at 3692.736 kb on + strand at 3692.807 kb on - strand, within Dsui_3437 at 3692.870 kb on - strand, within Dsui_3437 at 3692.883 kb on - strand, within Dsui_3437 at 3693.188 kb on - strand at 3693.411 kb on + strand at 3693.541 kb on + strand, within Dsui_3438 at 3693.549 kb on - strand, within Dsui_3438 at 3693.618 kb on + strand at 3693.883 kb on - strand, within Dsui_3438 at 3693.943 kb on + strand, within Dsui_3438 at 3693.981 kb on + strand, within Dsui_3438 at 3694.106 kb on + strand at 3694.124 kb on - strand at 3694.151 kb on - strand at 3694.409 kb on + strand at 3694.504 kb on + strand, within Dsui_3439 at 3694.523 kb on - strand, within Dsui_3439 at 3694.540 kb on + strand, within Dsui_3439 at 3694.853 kb on - strand, within Dsui_3439 at 3694.969 kb on + strand at 3695.060 kb on - strand, within Dsui_3439 at 3695.086 kb on + strand, within Dsui_3439 at 3695.094 kb on - strand, within Dsui_3439 at 3695.119 kb on + strand at 3695.160 kb on - strand, within Dsui_3439
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 3,692,409 - Dsui_3437 0.72 -0.4 3,692,487 + +0.5 3,692,526 - Dsui_3437 0.76 -0.1 3,692,545 - Dsui_3437 0.76 -0.3 3,692,605 - Dsui_3437 0.78 -0.8 3,692,669 - Dsui_3437 0.81 -0.5 3,692,700 - Dsui_3437 0.82 -0.1 3,692,736 + +0.5 3,692,807 - Dsui_3437 0.85 -0.3 3,692,870 - Dsui_3437 0.87 -0.5 3,692,883 - Dsui_3437 0.88 +0.2 3,693,188 - -0.0 3,693,411 + -1.5 3,693,541 + Dsui_3438 0.30 -2.1 3,693,549 - Dsui_3438 0.31 -0.2 3,693,618 + +0.5 3,693,883 - Dsui_3438 0.68 -0.1 3,693,943 + Dsui_3438 0.75 +0.5 3,693,981 + Dsui_3438 0.79 -0.5 3,694,106 + +0.5 3,694,124 - -0.4 3,694,151 - -0.1 3,694,409 + -1.5 3,694,504 + Dsui_3439 0.11 -0.5 3,694,523 - Dsui_3439 0.13 +0.0 3,694,540 + Dsui_3439 0.14 -0.5 3,694,853 - Dsui_3439 0.33 -1.0 3,694,969 + -0.5 3,695,060 - Dsui_3439 0.45 +0.3 3,695,086 + Dsui_3439 0.47 -1.1 3,695,094 - Dsui_3439 0.47 +0.1 3,695,119 + -0.5 3,695,160 - Dsui_3439 0.51 +0.1
Or see this region's nucleotide sequence