Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3384 and Dsui_3385 are separated by 36 nucleotides Dsui_3385 and Dsui_3386 are separated by 196 nucleotides Dsui_3386 and Dsui_3387 overlap by 4 nucleotides
Dsui_3384: Dsui_3384 - transporter, monovalent cation:proton antiporter-2 (CPA2) family, at 3,626,278 to 3,628,242
_3384
Dsui_3385: Dsui_3385 - Protein of unknown function (DUF1504), at 3,628,279 to 3,629,547
_3385
Dsui_3386: Dsui_3386 - response regulator, at 3,629,744 to 3,630,403
_3386
Dsui_3387: Dsui_3387 - histidine kinase,histidine kinase,MASE1-containing protein, at 3,630,400 to 3,632,037
_3387
Position (kb)
3628
3629
3630 Strain fitness (log2 ratio)
-2
-1
0
1 at 3627.323 kb on + strand, within Dsui_3384 at 3627.391 kb on + strand, within Dsui_3384 at 3627.422 kb on + strand, within Dsui_3384 at 3627.519 kb on + strand, within Dsui_3384 at 3627.653 kb on + strand, within Dsui_3384 at 3627.672 kb on + strand, within Dsui_3384 at 3627.910 kb on + strand, within Dsui_3384 at 3627.910 kb on + strand, within Dsui_3384 at 3627.920 kb on + strand, within Dsui_3384 at 3627.959 kb on + strand, within Dsui_3384 at 3628.012 kb on - strand, within Dsui_3384 at 3628.012 kb on - strand, within Dsui_3384 at 3628.012 kb on - strand, within Dsui_3384 at 3628.012 kb on - strand, within Dsui_3384 at 3628.159 kb on + strand at 3628.252 kb on - strand at 3629.553 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 3,627,323 + Dsui_3384 0.53 -0.5 3,627,391 + Dsui_3384 0.57 -0.5 3,627,422 + Dsui_3384 0.58 -1.5 3,627,519 + Dsui_3384 0.63 -1.5 3,627,653 + Dsui_3384 0.70 -0.5 3,627,672 + Dsui_3384 0.71 -2.5 3,627,910 + Dsui_3384 0.83 -1.1 3,627,910 + Dsui_3384 0.83 -1.5 3,627,920 + Dsui_3384 0.84 +0.5 3,627,959 + Dsui_3384 0.86 -1.8 3,628,012 - Dsui_3384 0.88 +0.1 3,628,012 - Dsui_3384 0.88 -0.2 3,628,012 - Dsui_3384 0.88 -0.2 3,628,012 - Dsui_3384 0.88 -0.2 3,628,159 + +0.5 3,628,252 - +0.2 3,629,553 - -0.3
Or see this region's nucleotide sequence