Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2968 and Dsui_2969 overlap by 4 nucleotides Dsui_2969 and Dsui_2970 are separated by 13 nucleotides Dsui_2970 and Dsui_2971 overlap by 4 nucleotides Dsui_2971 and Dsui_2972 are separated by 106 nucleotides
Dsui_2968: Dsui_2968 - ferredoxin, at 3,175,264 to 3,175,602
_2968
Dsui_2969: Dsui_2969 - uroporphyrin-III C-methyltransferase, at 3,175,599 to 3,176,366
_2969
Dsui_2970: Dsui_2970 - putative Fe-S oxidoreductase, at 3,176,380 to 3,176,670
_2970
Dsui_2971: Dsui_2971 - putative esterase of the alpha-beta hydrolase superfamily, at 3,176,667 to 3,177,560
_2971
Dsui_2972: Dsui_2972 - leucyl/phenylalanyl-tRNA--protein transferase, at 3,177,667 to 3,178,383
_2972
Position (kb)
3176
3177 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3175.383 kb on + strand, within Dsui_2968 at 3175.391 kb on - strand, within Dsui_2968 at 3175.427 kb on - strand, within Dsui_2968 at 3175.520 kb on + strand, within Dsui_2968 at 3175.522 kb on - strand, within Dsui_2968 at 3175.597 kb on - strand at 3175.690 kb on + strand at 3175.713 kb on + strand, within Dsui_2969 at 3175.828 kb on + strand, within Dsui_2969 at 3175.975 kb on + strand, within Dsui_2969 at 3176.067 kb on + strand, within Dsui_2969 at 3176.102 kb on - strand, within Dsui_2969 at 3176.173 kb on + strand, within Dsui_2969 at 3176.253 kb on - strand, within Dsui_2969 at 3176.269 kb on + strand, within Dsui_2969 at 3176.406 kb on + strand at 3176.414 kb on - strand, within Dsui_2970 at 3176.436 kb on + strand, within Dsui_2970 at 3176.479 kb on - strand, within Dsui_2970 at 3176.526 kb on + strand, within Dsui_2970 at 3176.850 kb on + strand, within Dsui_2971 at 3176.858 kb on - strand, within Dsui_2971 at 3176.863 kb on + strand, within Dsui_2971 at 3176.935 kb on + strand at 3176.943 kb on - strand, within Dsui_2971 at 3177.060 kb on - strand, within Dsui_2971 at 3177.128 kb on + strand at 3177.198 kb on - strand, within Dsui_2971 at 3177.245 kb on + strand at 3177.245 kb on + strand, within Dsui_2971 at 3177.289 kb on + strand at 3177.403 kb on - strand, within Dsui_2971 at 3177.432 kb on - strand, within Dsui_2971 at 3177.632 kb on - strand at 3177.637 kb on - strand at 3177.643 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 3,175,383 + Dsui_2968 0.35 -1.0 3,175,391 - Dsui_2968 0.37 -0.4 3,175,427 - Dsui_2968 0.48 +0.6 3,175,520 + Dsui_2968 0.76 -1.0 3,175,522 - Dsui_2968 0.76 -0.4 3,175,597 - +0.6 3,175,690 + +0.6 3,175,713 + Dsui_2969 0.15 -0.0 3,175,828 + Dsui_2969 0.30 -2.0 3,175,975 + Dsui_2969 0.49 -0.4 3,176,067 + Dsui_2969 0.61 -1.8 3,176,102 - Dsui_2969 0.65 -3.1 3,176,173 + Dsui_2969 0.75 +0.6 3,176,253 - Dsui_2969 0.85 -0.4 3,176,269 + Dsui_2969 0.87 -2.0 3,176,406 + +0.6 3,176,414 - Dsui_2970 0.12 -0.7 3,176,436 + Dsui_2970 0.19 -2.0 3,176,479 - Dsui_2970 0.34 +0.1 3,176,526 + Dsui_2970 0.50 -1.4 3,176,850 + Dsui_2971 0.20 +0.6 3,176,858 - Dsui_2971 0.21 -1.2 3,176,863 + Dsui_2971 0.22 +0.6 3,176,935 + -0.4 3,176,943 - Dsui_2971 0.31 -1.7 3,177,060 - Dsui_2971 0.44 -0.4 3,177,128 + -0.4 3,177,198 - Dsui_2971 0.59 -0.2 3,177,245 + +0.6 3,177,245 + Dsui_2971 0.65 -2.0 3,177,289 + +0.6 3,177,403 - Dsui_2971 0.82 -1.0 3,177,432 - Dsui_2971 0.86 -2.2 3,177,632 - +0.6 3,177,637 - +0.6 3,177,643 - +0.6
Or see this region's nucleotide sequence