Strain Fitness in Dechlorosoma suillum PS around Dsui_2893

Experiment: ALP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2892 and Dsui_2893 are separated by 67 nucleotidesDsui_2893 and Dsui_2894 are separated by 103 nucleotides Dsui_2892: Dsui_2892 - phosphoribosylformylglycinamidine synthase, single chain form, at 3,088,619 to 3,092,596 _2892 Dsui_2893: Dsui_2893 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,092,664 to 3,094,172 _2893 Dsui_2894: Dsui_2894 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,094,276 to 3,096,444 _2894 Position (kb) 3092 3093 3094 3095Strain fitness (log2 ratio) -3 -2 -1 0 1at 3092.680 kb on - strandat 3092.963 kb on - strand, within Dsui_2893at 3092.991 kb on + strandat 3093.092 kb on + strand, within Dsui_2893at 3093.094 kb on - strand, within Dsui_2893at 3093.129 kb on + strandat 3093.169 kb on - strand, within Dsui_2893at 3093.180 kb on - strand, within Dsui_2893at 3093.317 kb on + strandat 3093.358 kb on + strandat 3093.445 kb on - strand, within Dsui_2893at 3093.631 kb on - strand, within Dsui_2893at 3093.709 kb on - strand, within Dsui_2893at 3093.713 kb on + strand, within Dsui_2893at 3094.029 kb on + strandat 3094.042 kb on - strandat 3094.084 kb on - strandat 3094.105 kb on - strandat 3094.133 kb on + strandat 3094.141 kb on - strandat 3094.344 kb on + strandat 3094.421 kb on - strandat 3094.550 kb on + strand, within Dsui_2894at 3094.595 kb on + strandat 3094.666 kb on + strandat 3094.674 kb on - strand, within Dsui_2894at 3094.734 kb on - strand, within Dsui_2894at 3094.800 kb on - strand, within Dsui_2894at 3094.827 kb on - strand, within Dsui_2894at 3094.878 kb on - strand, within Dsui_2894at 3094.946 kb on - strand, within Dsui_2894at 3094.952 kb on + strandat 3095.047 kb on - strand, within Dsui_2894at 3095.094 kb on - strand, within Dsui_2894

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP
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3,092,680 - -1.0
3,092,963 - Dsui_2893 0.20 -0.4
3,092,991 + -0.4
3,093,092 + Dsui_2893 0.28 -1.0
3,093,094 - Dsui_2893 0.28 +0.6
3,093,129 + +0.6
3,093,169 - Dsui_2893 0.33 -2.4
3,093,180 - Dsui_2893 0.34 -3.6
3,093,317 + +0.6
3,093,358 + -0.4
3,093,445 - Dsui_2893 0.52 -1.4
3,093,631 - Dsui_2893 0.64 -1.0
3,093,709 - Dsui_2893 0.69 -1.0
3,093,713 + Dsui_2893 0.70 -1.0
3,094,029 + -1.0
3,094,042 - -0.1
3,094,084 - -0.1
3,094,105 - +0.1
3,094,133 + +0.6
3,094,141 - +0.2
3,094,344 + +0.6
3,094,421 - -0.4
3,094,550 + Dsui_2894 0.13 -0.4
3,094,595 + -0.4
3,094,666 + +0.6
3,094,674 - Dsui_2894 0.18 -2.0
3,094,734 - Dsui_2894 0.21 -0.4
3,094,800 - Dsui_2894 0.24 +0.6
3,094,827 - Dsui_2894 0.25 -1.0
3,094,878 - Dsui_2894 0.28 -0.4
3,094,946 - Dsui_2894 0.31 +0.6
3,094,952 + +0.6
3,095,047 - Dsui_2894 0.36 -1.4
3,095,094 - Dsui_2894 0.38 +0.6

Or see this region's nucleotide sequence