Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2890 and Dsui_2891 are separated by 21 nucleotides Dsui_2891 and Dsui_2892 are separated by 86 nucleotides
Dsui_2890: Dsui_2890 - diguanylate cyclase (GGDEF) domain-containing protein, at 3,086,175 to 3,088,103
_2890
Dsui_2891: Dsui_2891 - hemerythrin-like metal-binding domain-containing protein, at 3,088,125 to 3,088,532
_2891
Dsui_2892: Dsui_2892 - phosphoribosylformylglycinamidine synthase, single chain form, at 3,088,619 to 3,092,596
_2892
Position (kb)
3088
3089 Strain fitness (log2 ratio)
-2
-1
0
1 at 3087.166 kb on - strand, within Dsui_2890 at 3087.225 kb on - strand, within Dsui_2890 at 3087.490 kb on + strand, within Dsui_2890 at 3087.498 kb on - strand, within Dsui_2890 at 3087.714 kb on - strand, within Dsui_2890 at 3087.778 kb on + strand, within Dsui_2890 at 3087.873 kb on + strand, within Dsui_2890 at 3087.942 kb on + strand at 3087.983 kb on - strand at 3088.067 kb on + strand at 3088.080 kb on - strand at 3088.143 kb on - strand at 3088.144 kb on - strand at 3088.229 kb on + strand, within Dsui_2891 at 3088.420 kb on + strand, within Dsui_2891 at 3088.444 kb on + strand, within Dsui_2891 at 3088.449 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 3,087,166 - Dsui_2890 0.51 +0.6 3,087,225 - Dsui_2890 0.54 -1.4 3,087,490 + Dsui_2890 0.68 +0.6 3,087,498 - Dsui_2890 0.69 +0.6 3,087,714 - Dsui_2890 0.80 +0.6 3,087,778 + Dsui_2890 0.83 -1.0 3,087,873 + Dsui_2890 0.88 +0.6 3,087,942 + -1.8 3,087,983 - -2.0 3,088,067 + -1.0 3,088,080 - +0.5 3,088,143 - -0.2 3,088,144 - -0.3 3,088,229 + Dsui_2891 0.25 +0.6 3,088,420 + Dsui_2891 0.72 +0.6 3,088,444 + Dsui_2891 0.78 +0.6 3,088,449 + +0.6
Or see this region's nucleotide sequence