Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2708 and Dsui_2709 are separated by 22 nucleotides Dsui_2709 and Dsui_2710 are separated by 59 nucleotides
Dsui_2708: Dsui_2708 - succinyldiaminopimelate transaminase, at 2,864,527 to 2,865,732
_2708
Dsui_2709: Dsui_2709 - 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase, at 2,865,755 to 2,866,573
_2709
Dsui_2710: Dsui_2710 - pilus retraction protein PilT, at 2,866,633 to 2,867,814
_2710
Position (kb)
2865
2866
2867 Strain fitness (log2 ratio)
-1
0
1 at 2864.913 kb on + strand, within Dsui_2708 at 2864.937 kb on + strand, within Dsui_2708 at 2864.963 kb on + strand, within Dsui_2708 at 2865.006 kb on + strand, within Dsui_2708 at 2865.014 kb on - strand, within Dsui_2708 at 2865.081 kb on - strand at 2865.081 kb on - strand at 2865.081 kb on - strand at 2865.321 kb on - strand at 2865.503 kb on + strand, within Dsui_2708 at 2865.503 kb on + strand, within Dsui_2708 at 2865.534 kb on - strand, within Dsui_2708 at 2865.588 kb on + strand, within Dsui_2708 at 2865.709 kb on - strand at 2865.726 kb on + strand at 2865.727 kb on + strand at 2866.577 kb on + strand at 2866.582 kb on + strand at 2866.650 kb on + strand at 2866.794 kb on + strand, within Dsui_2710 at 2866.802 kb on - strand, within Dsui_2710 at 2866.817 kb on + strand, within Dsui_2710 at 2866.834 kb on + strand, within Dsui_2710 at 2866.920 kb on - strand, within Dsui_2710 at 2866.953 kb on - strand at 2866.955 kb on + strand, within Dsui_2710 at 2866.955 kb on + strand, within Dsui_2710 at 2866.955 kb on + strand, within Dsui_2710 at 2866.955 kb on + strand, within Dsui_2710 at 2867.094 kb on + strand, within Dsui_2710 at 2867.202 kb on - strand, within Dsui_2710 at 2867.272 kb on + strand, within Dsui_2710 at 2867.272 kb on + strand, within Dsui_2710 at 2867.272 kb on + strand, within Dsui_2710 at 2867.285 kb on - strand, within Dsui_2710 at 2867.417 kb on - strand, within Dsui_2710 at 2867.498 kb on + strand, within Dsui_2710 at 2867.508 kb on + strand, within Dsui_2710 at 2867.539 kb on - strand at 2867.541 kb on + strand, within Dsui_2710
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 2,864,913 + Dsui_2708 0.32 -0.3 2,864,937 + Dsui_2708 0.34 -0.2 2,864,963 + Dsui_2708 0.36 -0.4 2,865,006 + Dsui_2708 0.40 -0.1 2,865,014 - Dsui_2708 0.40 -0.4 2,865,081 - +0.6 2,865,081 - +0.6 2,865,081 - -0.4 2,865,321 - +0.6 2,865,503 + Dsui_2708 0.81 +0.0 2,865,503 + Dsui_2708 0.81 +0.1 2,865,534 - Dsui_2708 0.83 +0.6 2,865,588 + Dsui_2708 0.88 -0.4 2,865,709 - +0.6 2,865,726 + +0.2 2,865,727 + +0.0 2,866,577 + -0.0 2,866,582 + -0.0 2,866,650 + +0.2 2,866,794 + Dsui_2710 0.14 +0.3 2,866,802 - Dsui_2710 0.14 +0.6 2,866,817 + Dsui_2710 0.16 -0.3 2,866,834 + Dsui_2710 0.17 -0.2 2,866,920 - Dsui_2710 0.24 +0.6 2,866,953 - +0.6 2,866,955 + Dsui_2710 0.27 -0.8 2,866,955 + Dsui_2710 0.27 +0.2 2,866,955 + Dsui_2710 0.27 -0.7 2,866,955 + Dsui_2710 0.27 -0.2 2,867,094 + Dsui_2710 0.39 -0.5 2,867,202 - Dsui_2710 0.48 -1.0 2,867,272 + Dsui_2710 0.54 -0.0 2,867,272 + Dsui_2710 0.54 -0.0 2,867,272 + Dsui_2710 0.54 +0.1 2,867,285 - Dsui_2710 0.55 -1.4 2,867,417 - Dsui_2710 0.66 -0.4 2,867,498 + Dsui_2710 0.73 +0.1 2,867,508 + Dsui_2710 0.74 -0.1 2,867,539 - +0.6 2,867,541 + Dsui_2710 0.77 +0.2
Or see this region's nucleotide sequence