Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2666 and Dsui_2667 are separated by 12 nucleotides Dsui_2667 and Dsui_2668 overlap by 4 nucleotides Dsui_2668 and Dsui_2669 are separated by 115 nucleotides Dsui_2669 and Dsui_2670 are separated by 89 nucleotides
Dsui_2666: Dsui_2666 - putative transcriptional regulator, at 2,818,458 to 2,818,901
_2666
Dsui_2667: Dsui_2667 - acetyltransferase, at 2,818,914 to 2,819,447
_2667
Dsui_2668: Dsui_2668 - putative phosphatase, at 2,819,444 to 2,821,390
_2668
Dsui_2669: Dsui_2669 - ankyrin repeat-containing protein, at 2,821,506 to 2,822,252
_2669
Dsui_2670: Dsui_2670 - GMP synthase (glutamine-hydrolyzing), at 2,822,342 to 2,823,976
_2670
Position (kb)
2819
2820
2821
2822 Strain fitness (log2 ratio)
-2
-1
0
1 at 2818.447 kb on + strand at 2818.455 kb on + strand at 2818.471 kb on - strand at 2818.569 kb on - strand, within Dsui_2666 at 2818.597 kb on - strand, within Dsui_2666 at 2818.693 kb on - strand, within Dsui_2666 at 2818.754 kb on - strand, within Dsui_2666 at 2818.758 kb on + strand, within Dsui_2666 at 2819.006 kb on - strand at 2819.118 kb on + strand, within Dsui_2667 at 2819.274 kb on + strand, within Dsui_2667 at 2819.274 kb on + strand, within Dsui_2667 at 2819.389 kb on + strand, within Dsui_2667 at 2819.407 kb on + strand at 2819.455 kb on - strand at 2819.617 kb on + strand at 2819.662 kb on + strand at 2819.964 kb on + strand, within Dsui_2668 at 2820.061 kb on + strand at 2820.104 kb on - strand at 2820.128 kb on - strand at 2820.211 kb on + strand at 2820.239 kb on - strand at 2820.333 kb on + strand at 2820.368 kb on + strand, within Dsui_2668 at 2820.369 kb on + strand, within Dsui_2668 at 2820.371 kb on + strand at 2820.400 kb on + strand at 2820.401 kb on + strand at 2820.439 kb on - strand at 2820.460 kb on + strand, within Dsui_2668 at 2820.622 kb on - strand at 2820.653 kb on + strand, within Dsui_2668 at 2820.653 kb on + strand at 2820.665 kb on + strand at 2820.666 kb on - strand at 2820.692 kb on + strand at 2821.125 kb on + strand at 2821.339 kb on + strand at 2821.546 kb on + strand at 2821.638 kb on - strand at 2821.655 kb on + strand, within Dsui_2669 at 2821.824 kb on + strand, within Dsui_2669 at 2821.831 kb on + strand, within Dsui_2669 at 2821.831 kb on + strand, within Dsui_2669 at 2821.831 kb on + strand, within Dsui_2669 at 2821.831 kb on + strand, within Dsui_2669 at 2821.893 kb on - strand, within Dsui_2669 at 2821.924 kb on + strand, within Dsui_2669 at 2821.924 kb on + strand, within Dsui_2669 at 2821.924 kb on + strand, within Dsui_2669 at 2821.929 kb on + strand, within Dsui_2669 at 2822.075 kb on - strand at 2822.135 kb on - strand, within Dsui_2669 at 2822.135 kb on - strand, within Dsui_2669 at 2822.185 kb on - strand at 2822.241 kb on + strand at 2822.303 kb on + strand at 2822.311 kb on - strand at 2822.311 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 2,818,447 + +0.0 2,818,455 + +0.2 2,818,471 - -0.4 2,818,569 - Dsui_2666 0.25 +0.6 2,818,597 - Dsui_2666 0.31 +0.6 2,818,693 - Dsui_2666 0.53 -1.4 2,818,754 - Dsui_2666 0.67 -0.4 2,818,758 + Dsui_2666 0.68 +0.0 2,819,006 - +0.6 2,819,118 + Dsui_2667 0.38 +0.6 2,819,274 + Dsui_2667 0.67 -2.7 2,819,274 + Dsui_2667 0.67 -1.0 2,819,389 + Dsui_2667 0.89 -2.2 2,819,407 + +0.6 2,819,455 - +0.6 2,819,617 + -2.0 2,819,662 + +0.6 2,819,964 + Dsui_2668 0.27 -0.4 2,820,061 + +0.6 2,820,104 - -1.0 2,820,128 - -0.4 2,820,211 + -1.4 2,820,239 - -0.4 2,820,333 + +0.6 2,820,368 + Dsui_2668 0.47 -1.4 2,820,369 + Dsui_2668 0.48 -1.0 2,820,371 + -1.0 2,820,400 + +0.6 2,820,401 + -0.4 2,820,439 - +0.6 2,820,460 + Dsui_2668 0.52 -1.0 2,820,622 - -0.4 2,820,653 + Dsui_2668 0.62 -0.4 2,820,653 + +0.6 2,820,665 + -0.4 2,820,666 - +0.6 2,820,692 + -0.4 2,821,125 + +0.6 2,821,339 + -0.4 2,821,546 + -2.5 2,821,638 - +0.6 2,821,655 + Dsui_2669 0.20 +0.6 2,821,824 + Dsui_2669 0.43 -2.2 2,821,831 + Dsui_2669 0.44 -1.5 2,821,831 + Dsui_2669 0.44 -1.4 2,821,831 + Dsui_2669 0.44 -1.4 2,821,831 + Dsui_2669 0.44 -1.3 2,821,893 - Dsui_2669 0.52 -0.4 2,821,924 + Dsui_2669 0.56 -1.0 2,821,924 + Dsui_2669 0.56 -2.4 2,821,924 + Dsui_2669 0.56 -1.7 2,821,929 + Dsui_2669 0.57 +1.6 2,822,075 - +0.6 2,822,135 - Dsui_2669 0.84 -0.4 2,822,135 - Dsui_2669 0.84 -0.4 2,822,185 - +0.6 2,822,241 + -0.1 2,822,303 + +0.6 2,822,311 - -0.1 2,822,311 - +0.3
Or see this region's nucleotide sequence