Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2658 and Dsui_2659 are separated by 329 nucleotides Dsui_2659 and Dsui_2660 are separated by 114 nucleotides Dsui_2660 and Dsui_2661 overlap by 4 nucleotides Dsui_2661 and Dsui_2662 are separated by 139 nucleotides
Dsui_2658: Dsui_2658 - hypothetical protein, at 2,813,441 to 2,814,190
_2658
Dsui_2659: Dsui_2659 - cold shock protein, at 2,814,520 to 2,814,723
_2659
Dsui_2660: Dsui_2660 - hypothetical protein, at 2,814,838 to 2,815,320
_2660
Dsui_2661: Dsui_2661 - cytosine/adenosine deaminase, at 2,815,317 to 2,815,778
_2661
Dsui_2662: Dsui_2662 - hypothetical protein, at 2,815,918 to 2,816,817
_2662
Position (kb)
2814
2815
2816 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2813.850 kb on + strand, within Dsui_2658 at 2813.886 kb on + strand, within Dsui_2658 at 2813.889 kb on - strand, within Dsui_2658 at 2813.946 kb on + strand, within Dsui_2658 at 2813.959 kb on - strand, within Dsui_2658 at 2814.004 kb on + strand, within Dsui_2658 at 2814.055 kb on - strand at 2814.062 kb on + strand, within Dsui_2658 at 2814.120 kb on + strand at 2814.193 kb on - strand at 2814.223 kb on + strand at 2814.351 kb on + strand at 2814.351 kb on + strand at 2814.352 kb on + strand at 2814.353 kb on + strand at 2814.362 kb on - strand at 2814.380 kb on + strand at 2814.380 kb on + strand at 2814.380 kb on + strand at 2814.388 kb on - strand at 2814.420 kb on + strand at 2814.420 kb on + strand at 2814.425 kb on + strand at 2814.428 kb on - strand at 2814.428 kb on - strand at 2814.428 kb on - strand at 2814.430 kb on + strand at 2814.430 kb on + strand at 2814.433 kb on - strand at 2814.433 kb on - strand at 2814.433 kb on - strand at 2814.438 kb on + strand at 2814.438 kb on + strand at 2814.438 kb on + strand at 2814.438 kb on + strand at 2814.438 kb on - strand at 2814.438 kb on - strand at 2814.443 kb on + strand at 2814.443 kb on + strand at 2814.446 kb on - strand at 2814.446 kb on - strand at 2814.457 kb on + strand at 2814.465 kb on - strand at 2814.474 kb on + strand at 2814.474 kb on + strand at 2814.482 kb on - strand at 2814.482 kb on - strand at 2814.533 kb on + strand at 2814.533 kb on + strand at 2814.533 kb on + strand at 2814.533 kb on - strand at 2814.559 kb on + strand, within Dsui_2659 at 2814.579 kb on + strand, within Dsui_2659 at 2814.587 kb on - strand at 2814.587 kb on - strand at 2814.590 kb on + strand, within Dsui_2659 at 2814.677 kb on + strand, within Dsui_2659 at 2814.682 kb on + strand, within Dsui_2659 at 2814.682 kb on + strand, within Dsui_2659 at 2814.682 kb on + strand, within Dsui_2659 at 2814.699 kb on + strand, within Dsui_2659 at 2814.716 kb on - strand at 2814.718 kb on + strand at 2814.718 kb on + strand at 2814.726 kb on - strand at 2814.816 kb on + strand at 2814.821 kb on + strand at 2814.824 kb on - strand at 2814.829 kb on - strand at 2814.830 kb on - strand at 2814.843 kb on - strand at 2814.851 kb on - strand at 2815.330 kb on + strand at 2815.848 kb on - strand at 2815.848 kb on - strand at 2815.929 kb on + strand at 2815.929 kb on + strand at 2815.988 kb on + strand at 2816.006 kb on - strand at 2816.065 kb on - strand, within Dsui_2662 at 2816.067 kb on + strand at 2816.075 kb on - strand, within Dsui_2662 at 2816.077 kb on - strand at 2816.160 kb on + strand, within Dsui_2662 at 2816.179 kb on - strand at 2816.209 kb on + strand at 2816.217 kb on - strand, within Dsui_2662 at 2816.217 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 2,813,850 + Dsui_2658 0.55 -1.2 2,813,886 + Dsui_2658 0.59 -0.4 2,813,889 - Dsui_2658 0.60 -2.2 2,813,946 + Dsui_2658 0.67 +0.2 2,813,959 - Dsui_2658 0.69 -1.0 2,814,004 + Dsui_2658 0.75 -0.1 2,814,055 - -0.4 2,814,062 + Dsui_2658 0.83 -0.8 2,814,120 + -0.4 2,814,193 - +0.6 2,814,223 + -1.0 2,814,351 + +0.6 2,814,351 + -0.4 2,814,352 + +1.4 2,814,353 + -0.4 2,814,362 - -1.2 2,814,380 + -0.2 2,814,380 + -0.1 2,814,380 + -0.2 2,814,388 - -0.4 2,814,420 + +0.2 2,814,420 + +0.0 2,814,425 + -0.1 2,814,428 - +0.6 2,814,428 - +0.6 2,814,428 - -1.0 2,814,430 + +0.1 2,814,430 + +0.0 2,814,433 - -1.0 2,814,433 - +0.6 2,814,433 - +0.6 2,814,438 + +0.0 2,814,438 + -0.0 2,814,438 + +0.0 2,814,438 + +0.1 2,814,438 - +0.6 2,814,438 - +0.6 2,814,443 + -0.0 2,814,443 + -0.3 2,814,446 - +0.6 2,814,446 - -0.4 2,814,457 + +0.1 2,814,465 - +0.6 2,814,474 + -0.2 2,814,474 + -0.1 2,814,482 - +0.6 2,814,482 - -0.4 2,814,533 + -0.2 2,814,533 + +0.2 2,814,533 + -0.3 2,814,533 - -0.4 2,814,559 + Dsui_2659 0.19 -0.0 2,814,579 + Dsui_2659 0.29 +0.1 2,814,587 - +0.6 2,814,587 - +0.6 2,814,590 + Dsui_2659 0.34 +0.1 2,814,677 + Dsui_2659 0.77 +0.4 2,814,682 + Dsui_2659 0.79 -0.0 2,814,682 + Dsui_2659 0.79 +0.0 2,814,682 + Dsui_2659 0.79 +0.2 2,814,699 + Dsui_2659 0.88 +0.0 2,814,716 - -0.4 2,814,718 + +0.0 2,814,718 + +0.1 2,814,726 - -1.0 2,814,816 + -2.2 2,814,821 + +0.6 2,814,824 - -0.5 2,814,829 - -0.4 2,814,830 - -0.6 2,814,843 - -0.0 2,814,851 - +0.1 2,815,330 + +0.6 2,815,848 - +0.2 2,815,848 - -0.4 2,815,929 + +0.6 2,815,929 + -0.4 2,815,988 + +0.6 2,816,006 - -1.7 2,816,065 - Dsui_2662 0.16 -0.4 2,816,067 + +0.6 2,816,075 - Dsui_2662 0.17 +0.6 2,816,077 - +0.6 2,816,160 + Dsui_2662 0.27 -1.2 2,816,179 - -1.0 2,816,209 + +3.0 2,816,217 - Dsui_2662 0.33 -0.4 2,816,217 - +0.6
Or see this region's nucleotide sequence