Strain Fitness in Dechlorosoma suillum PS around Dsui_2246

Experiment: ALP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2244 and Dsui_2245 are separated by 187 nucleotidesDsui_2245 and Dsui_2246 are separated by 11 nucleotidesDsui_2246 and Dsui_2247 are separated by 9 nucleotidesDsui_2247 and Dsui_2248 are separated by 40 nucleotides Dsui_2244: Dsui_2244 - DNA mismatch repair protein MutS, at 2,390,804 to 2,393,407 _2244 Dsui_2245: Dsui_2245 - protein of unknown function (DUF1924), at 2,393,595 to 2,394,017 _2245 Dsui_2246: Dsui_2246 - Diheme cytochrome c, at 2,394,029 to 2,394,508 _2246 Dsui_2247: Dsui_2247 - cytochrome b, at 2,394,518 to 2,395,177 _2247 Dsui_2248: Dsui_2248 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 2,395,218 to 2,395,895 _2248 Position (kb) 2394 2395Strain fitness (log2 ratio) -1 0 1at 2393.232 kb on - strandat 2393.232 kb on - strandat 2393.232 kb on - strandat 2393.244 kb on + strandat 2393.337 kb on - strandat 2393.354 kb on - strandat 2393.411 kb on - strandat 2393.412 kb on - strandat 2393.519 kb on + strandat 2393.685 kb on + strandat 2393.775 kb on + strandat 2393.783 kb on - strandat 2393.783 kb on - strandat 2394.067 kb on - strandat 2394.180 kb on + strandat 2394.188 kb on - strandat 2394.200 kb on - strandat 2394.277 kb on - strandat 2394.312 kb on + strand, within Dsui_2246at 2394.438 kb on - strandat 2394.628 kb on - strandat 2394.993 kb on - strand, within Dsui_2247at 2395.084 kb on - strandat 2395.194 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP
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2,393,232 - -0.1
2,393,232 - -0.4
2,393,232 - -0.2
2,393,244 + +0.7
2,393,337 - -0.3
2,393,354 - +0.7
2,393,411 - -0.7
2,393,412 - -0.3
2,393,519 + +0.7
2,393,685 + +0.7
2,393,775 + +0.7
2,393,783 - +0.7
2,393,783 - +0.7
2,394,067 - -0.3
2,394,180 + +0.7
2,394,188 - -0.3
2,394,200 - +0.7
2,394,277 - -0.9
2,394,312 + Dsui_2246 0.59 -0.9
2,394,438 - +0.7
2,394,628 - +0.7
2,394,993 - Dsui_2247 0.72 +0.7
2,395,084 - +0.7
2,395,194 + +0.7

Or see this region's nucleotide sequence