Strain Fitness in Dechlorosoma suillum PS around Dsui_1900

Experiment: ALP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1899 and Dsui_1900 are separated by 77 nucleotidesDsui_1900 and Dsui_1901 are separated by 375 nucleotides Dsui_1899: Dsui_1899 - rRNA methylase, putative, group 3, at 1,998,445 to 1,999,206 _1899 Dsui_1900: Dsui_1900 - hypothetical protein, at 1,999,284 to 1,999,850 _1900 Dsui_1901: Dsui_1901 - peroxiredoxin, at 2,000,226 to 2,000,795 _1901 Position (kb) 1999 2000Strain fitness (log2 ratio) -2 -1 0 1at 1998.334 kb on - strandat 1998.455 kb on - strandat 1998.589 kb on + strand, within Dsui_1899at 1998.667 kb on - strand, within Dsui_1899at 1998.803 kb on - strand, within Dsui_1899at 1998.873 kb on + strand, within Dsui_1899at 1998.873 kb on + strand, within Dsui_1899at 1998.881 kb on - strandat 1998.881 kb on - strandat 1998.937 kb on + strand, within Dsui_1899at 1998.959 kb on + strand, within Dsui_1899at 1999.014 kb on + strand, within Dsui_1899at 1999.014 kb on + strand, within Dsui_1899at 1999.017 kb on + strand, within Dsui_1899at 1999.017 kb on + strand, within Dsui_1899at 1999.017 kb on + strand, within Dsui_1899at 1999.025 kb on - strand, within Dsui_1899at 1999.355 kb on + strand, within Dsui_1900at 1999.427 kb on + strand, within Dsui_1900at 1999.693 kb on + strand, within Dsui_1900at 1999.703 kb on + strand, within Dsui_1900at 1999.705 kb on + strand, within Dsui_1900at 1999.706 kb on - strand, within Dsui_1900at 1999.750 kb on + strand, within Dsui_1900at 1999.808 kb on - strandat 1999.845 kb on + strandat 1999.954 kb on - strandat 1999.954 kb on - strandat 2000.067 kb on + strandat 2000.132 kb on + strandat 2000.172 kb on + strandat 2000.180 kb on - strandat 2000.260 kb on - strandat 2000.282 kb on - strandat 2000.291 kb on + strand, within Dsui_1901at 2000.323 kb on - strand, within Dsui_1901at 2000.324 kb on + strand, within Dsui_1901at 2000.425 kb on + strand, within Dsui_1901at 2000.432 kb on + strand, within Dsui_1901at 2000.440 kb on - strand, within Dsui_1901at 2000.578 kb on + strand, within Dsui_1901at 2000.578 kb on + strand, within Dsui_1901at 2000.629 kb on - strand, within Dsui_1901at 2000.637 kb on - strand, within Dsui_1901at 2000.673 kb on + strand, within Dsui_1901at 2000.681 kb on - strand, within Dsui_1901at 2000.692 kb on - strand, within Dsui_1901at 2000.778 kb on - strandat 2000.806 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP
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1,998,334 - +0.1
1,998,455 - +0.8
1,998,589 + Dsui_1899 0.19 +0.2
1,998,667 - Dsui_1899 0.29 -0.2
1,998,803 - Dsui_1899 0.47 +0.8
1,998,873 + Dsui_1899 0.56 -0.2
1,998,873 + Dsui_1899 0.56 +0.9
1,998,881 - +0.8
1,998,881 - +0.8
1,998,937 + Dsui_1899 0.65 -0.3
1,998,959 + Dsui_1899 0.67 +0.1
1,999,014 + Dsui_1899 0.75 -0.2
1,999,014 + Dsui_1899 0.75 -0.3
1,999,017 + Dsui_1899 0.75 -0.4
1,999,017 + Dsui_1899 0.75 -0.4
1,999,017 + Dsui_1899 0.75 -0.4
1,999,025 - Dsui_1899 0.76 -0.2
1,999,355 + Dsui_1900 0.13 -0.8
1,999,427 + Dsui_1900 0.25 -0.8
1,999,693 + Dsui_1900 0.72 +0.8
1,999,703 + Dsui_1900 0.74 -0.2
1,999,705 + Dsui_1900 0.74 -1.2
1,999,706 - Dsui_1900 0.74 +0.8
1,999,750 + Dsui_1900 0.82 -0.2
1,999,808 - +0.8
1,999,845 + +0.8
1,999,954 - +0.8
1,999,954 - -0.8
2,000,067 + -0.3
2,000,132 + -0.1
2,000,172 + +0.2
2,000,180 - +0.8
2,000,260 - -1.2
2,000,282 - -0.8
2,000,291 + Dsui_1901 0.11 +0.3
2,000,323 - Dsui_1901 0.17 +0.8
2,000,324 + Dsui_1901 0.17 +0.4
2,000,425 + Dsui_1901 0.35 -0.1
2,000,432 + Dsui_1901 0.36 +0.2
2,000,440 - Dsui_1901 0.38 +0.8
2,000,578 + Dsui_1901 0.62 +0.3
2,000,578 + Dsui_1901 0.62 -0.0
2,000,629 - Dsui_1901 0.71 -0.2
2,000,637 - Dsui_1901 0.72 -1.8
2,000,673 + Dsui_1901 0.78 -0.1
2,000,681 - Dsui_1901 0.80 -0.2
2,000,692 - Dsui_1901 0.82 -1.2
2,000,778 - +0.8
2,000,806 - +0.8

Or see this region's nucleotide sequence