Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1899 and Dsui_1900 are separated by 77 nucleotides Dsui_1900 and Dsui_1901 are separated by 375 nucleotides
Dsui_1899: Dsui_1899 - rRNA methylase, putative, group 3, at 1,998,445 to 1,999,206
_1899
Dsui_1900: Dsui_1900 - hypothetical protein, at 1,999,284 to 1,999,850
_1900
Dsui_1901: Dsui_1901 - peroxiredoxin, at 2,000,226 to 2,000,795
_1901
Position (kb)
1999
2000 Strain fitness (log2 ratio)
-2
-1
0
1 at 1998.334 kb on - strand at 1998.455 kb on - strand at 1998.589 kb on + strand, within Dsui_1899 at 1998.667 kb on - strand, within Dsui_1899 at 1998.803 kb on - strand, within Dsui_1899 at 1998.873 kb on + strand, within Dsui_1899 at 1998.873 kb on + strand, within Dsui_1899 at 1998.881 kb on - strand at 1998.881 kb on - strand at 1998.937 kb on + strand, within Dsui_1899 at 1998.959 kb on + strand, within Dsui_1899 at 1999.014 kb on + strand, within Dsui_1899 at 1999.014 kb on + strand, within Dsui_1899 at 1999.017 kb on + strand, within Dsui_1899 at 1999.017 kb on + strand, within Dsui_1899 at 1999.017 kb on + strand, within Dsui_1899 at 1999.025 kb on - strand, within Dsui_1899 at 1999.355 kb on + strand, within Dsui_1900 at 1999.427 kb on + strand, within Dsui_1900 at 1999.693 kb on + strand, within Dsui_1900 at 1999.703 kb on + strand, within Dsui_1900 at 1999.705 kb on + strand, within Dsui_1900 at 1999.706 kb on - strand, within Dsui_1900 at 1999.750 kb on + strand, within Dsui_1900 at 1999.808 kb on - strand at 1999.845 kb on + strand at 1999.954 kb on - strand at 1999.954 kb on - strand at 2000.067 kb on + strand at 2000.132 kb on + strand at 2000.172 kb on + strand at 2000.180 kb on - strand at 2000.260 kb on - strand at 2000.282 kb on - strand at 2000.291 kb on + strand, within Dsui_1901 at 2000.323 kb on - strand, within Dsui_1901 at 2000.324 kb on + strand, within Dsui_1901 at 2000.425 kb on + strand, within Dsui_1901 at 2000.432 kb on + strand, within Dsui_1901 at 2000.440 kb on - strand, within Dsui_1901 at 2000.578 kb on + strand, within Dsui_1901 at 2000.578 kb on + strand, within Dsui_1901 at 2000.629 kb on - strand, within Dsui_1901 at 2000.637 kb on - strand, within Dsui_1901 at 2000.673 kb on + strand, within Dsui_1901 at 2000.681 kb on - strand, within Dsui_1901 at 2000.692 kb on - strand, within Dsui_1901 at 2000.778 kb on - strand at 2000.806 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 1,998,334 - +0.1 1,998,455 - +0.8 1,998,589 + Dsui_1899 0.19 +0.2 1,998,667 - Dsui_1899 0.29 -0.2 1,998,803 - Dsui_1899 0.47 +0.8 1,998,873 + Dsui_1899 0.56 -0.2 1,998,873 + Dsui_1899 0.56 +0.9 1,998,881 - +0.8 1,998,881 - +0.8 1,998,937 + Dsui_1899 0.65 -0.3 1,998,959 + Dsui_1899 0.67 +0.1 1,999,014 + Dsui_1899 0.75 -0.2 1,999,014 + Dsui_1899 0.75 -0.3 1,999,017 + Dsui_1899 0.75 -0.4 1,999,017 + Dsui_1899 0.75 -0.4 1,999,017 + Dsui_1899 0.75 -0.4 1,999,025 - Dsui_1899 0.76 -0.2 1,999,355 + Dsui_1900 0.13 -0.8 1,999,427 + Dsui_1900 0.25 -0.8 1,999,693 + Dsui_1900 0.72 +0.8 1,999,703 + Dsui_1900 0.74 -0.2 1,999,705 + Dsui_1900 0.74 -1.2 1,999,706 - Dsui_1900 0.74 +0.8 1,999,750 + Dsui_1900 0.82 -0.2 1,999,808 - +0.8 1,999,845 + +0.8 1,999,954 - +0.8 1,999,954 - -0.8 2,000,067 + -0.3 2,000,132 + -0.1 2,000,172 + +0.2 2,000,180 - +0.8 2,000,260 - -1.2 2,000,282 - -0.8 2,000,291 + Dsui_1901 0.11 +0.3 2,000,323 - Dsui_1901 0.17 +0.8 2,000,324 + Dsui_1901 0.17 +0.4 2,000,425 + Dsui_1901 0.35 -0.1 2,000,432 + Dsui_1901 0.36 +0.2 2,000,440 - Dsui_1901 0.38 +0.8 2,000,578 + Dsui_1901 0.62 +0.3 2,000,578 + Dsui_1901 0.62 -0.0 2,000,629 - Dsui_1901 0.71 -0.2 2,000,637 - Dsui_1901 0.72 -1.8 2,000,673 + Dsui_1901 0.78 -0.1 2,000,681 - Dsui_1901 0.80 -0.2 2,000,692 - Dsui_1901 0.82 -1.2 2,000,778 - +0.8 2,000,806 - +0.8
Or see this region's nucleotide sequence