Strain Fitness in Dechlorosoma suillum PS around Dsui_1884

Experiment: ALP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1883 and Dsui_1884 are separated by 0 nucleotidesDsui_1884 and Dsui_1885 are separated by 13 nucleotidesDsui_1885 and Dsui_1886 overlap by 8 nucleotides Dsui_1883: Dsui_1883 - ATPase component of ABC transporters with duplicated ATPase domain, at 1,980,741 to 1,982,663 _1883 Dsui_1884: Dsui_1884 - histidine kinase, at 1,982,664 to 1,983,827 _1884 Dsui_1885: Dsui_1885 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,983,841 to 1,984,383 _1885 Dsui_1886: Dsui_1886 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,984,376 to 1,985,689 _1886 Position (kb) 1982 1983 1984Strain fitness (log2 ratio) -2 -1 0 1at 1981.885 kb on + strand, within Dsui_1883at 1981.896 kb on - strandat 1981.921 kb on - strandat 1981.965 kb on + strand, within Dsui_1883at 1982.086 kb on + strand, within Dsui_1883at 1982.178 kb on - strand, within Dsui_1883at 1982.178 kb on - strand, within Dsui_1883at 1982.212 kb on + strand, within Dsui_1883at 1982.380 kb on - strand, within Dsui_1883at 1982.454 kb on - strandat 1982.500 kb on + strandat 1982.568 kb on + strandat 1982.568 kb on + strandat 1982.576 kb on - strandat 1982.849 kb on - strand, within Dsui_1884at 1983.040 kb on - strand, within Dsui_1884at 1983.136 kb on + strand, within Dsui_1884at 1983.293 kb on + strandat 1983.421 kb on + strand, within Dsui_1884at 1983.435 kb on - strand, within Dsui_1884at 1983.634 kb on - strand, within Dsui_1884at 1984.038 kb on - strand, within Dsui_1885at 1984.043 kb on - strand, within Dsui_1885at 1984.083 kb on - strand, within Dsui_1885at 1984.091 kb on + strand, within Dsui_1885at 1984.223 kb on - strand, within Dsui_1885at 1984.243 kb on - strand, within Dsui_1885at 1984.256 kb on + strand, within Dsui_1885at 1984.406 kb on + strandat 1984.520 kb on + strand, within Dsui_1886at 1984.673 kb on + strandat 1984.680 kb on - strand, within Dsui_1886at 1984.680 kb on - strand, within Dsui_1886at 1984.737 kb on + strand, within Dsui_1886at 1984.809 kb on - strand, within Dsui_1886

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP
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1,981,885 + Dsui_1883 0.59 +1.3
1,981,896 - -0.2
1,981,921 - -0.2
1,981,965 + Dsui_1883 0.64 +0.1
1,982,086 + Dsui_1883 0.70 -1.8
1,982,178 - Dsui_1883 0.75 -0.8
1,982,178 - Dsui_1883 0.75 -1.5
1,982,212 + Dsui_1883 0.76 -0.8
1,982,380 - Dsui_1883 0.85 -0.2
1,982,454 - +0.8
1,982,500 + -0.2
1,982,568 + +0.0
1,982,568 + +0.5
1,982,576 - -0.2
1,982,849 - Dsui_1884 0.16 +0.0
1,983,040 - Dsui_1884 0.32 -0.8
1,983,136 + Dsui_1884 0.41 -1.5
1,983,293 + +0.8
1,983,421 + Dsui_1884 0.65 -0.8
1,983,435 - Dsui_1884 0.66 -1.2
1,983,634 - Dsui_1884 0.83 -0.2
1,984,038 - Dsui_1885 0.36 -0.2
1,984,043 - Dsui_1885 0.37 +0.2
1,984,083 - Dsui_1885 0.45 +0.2
1,984,091 + Dsui_1885 0.46 +0.8
1,984,223 - Dsui_1885 0.70 +0.7
1,984,243 - Dsui_1885 0.74 +0.8
1,984,256 + Dsui_1885 0.76 -0.2
1,984,406 + +0.8
1,984,520 + Dsui_1886 0.11 -1.8
1,984,673 + +0.8
1,984,680 - Dsui_1886 0.23 -0.1
1,984,680 - Dsui_1886 0.23 -2.0
1,984,737 + Dsui_1886 0.27 +0.8
1,984,809 - Dsui_1886 0.33 -0.8

Or see this region's nucleotide sequence