Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1883 and Dsui_1884 are separated by 0 nucleotides Dsui_1884 and Dsui_1885 are separated by 13 nucleotides Dsui_1885 and Dsui_1886 overlap by 8 nucleotides
Dsui_1883: Dsui_1883 - ATPase component of ABC transporters with duplicated ATPase domain, at 1,980,741 to 1,982,663
_1883
Dsui_1884: Dsui_1884 - histidine kinase, at 1,982,664 to 1,983,827
_1884
Dsui_1885: Dsui_1885 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 1,983,841 to 1,984,383
_1885
Dsui_1886: Dsui_1886 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 1,984,376 to 1,985,689
_1886
Position (kb)
1982
1983
1984 Strain fitness (log2 ratio)
-2
-1
0
1 at 1981.885 kb on + strand, within Dsui_1883 at 1981.896 kb on - strand at 1981.921 kb on - strand at 1981.965 kb on + strand, within Dsui_1883 at 1982.086 kb on + strand, within Dsui_1883 at 1982.178 kb on - strand, within Dsui_1883 at 1982.178 kb on - strand, within Dsui_1883 at 1982.212 kb on + strand, within Dsui_1883 at 1982.380 kb on - strand, within Dsui_1883 at 1982.454 kb on - strand at 1982.500 kb on + strand at 1982.568 kb on + strand at 1982.568 kb on + strand at 1982.576 kb on - strand at 1982.849 kb on - strand, within Dsui_1884 at 1983.040 kb on - strand, within Dsui_1884 at 1983.136 kb on + strand, within Dsui_1884 at 1983.293 kb on + strand at 1983.421 kb on + strand, within Dsui_1884 at 1983.435 kb on - strand, within Dsui_1884 at 1983.634 kb on - strand, within Dsui_1884 at 1984.038 kb on - strand, within Dsui_1885 at 1984.043 kb on - strand, within Dsui_1885 at 1984.083 kb on - strand, within Dsui_1885 at 1984.091 kb on + strand, within Dsui_1885 at 1984.223 kb on - strand, within Dsui_1885 at 1984.243 kb on - strand, within Dsui_1885 at 1984.256 kb on + strand, within Dsui_1885 at 1984.406 kb on + strand at 1984.520 kb on + strand, within Dsui_1886 at 1984.673 kb on + strand at 1984.680 kb on - strand, within Dsui_1886 at 1984.680 kb on - strand, within Dsui_1886 at 1984.737 kb on + strand, within Dsui_1886 at 1984.809 kb on - strand, within Dsui_1886
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 1,981,885 + Dsui_1883 0.59 +1.3 1,981,896 - -0.2 1,981,921 - -0.2 1,981,965 + Dsui_1883 0.64 +0.1 1,982,086 + Dsui_1883 0.70 -1.8 1,982,178 - Dsui_1883 0.75 -0.8 1,982,178 - Dsui_1883 0.75 -1.5 1,982,212 + Dsui_1883 0.76 -0.8 1,982,380 - Dsui_1883 0.85 -0.2 1,982,454 - +0.8 1,982,500 + -0.2 1,982,568 + +0.0 1,982,568 + +0.5 1,982,576 - -0.2 1,982,849 - Dsui_1884 0.16 +0.0 1,983,040 - Dsui_1884 0.32 -0.8 1,983,136 + Dsui_1884 0.41 -1.5 1,983,293 + +0.8 1,983,421 + Dsui_1884 0.65 -0.8 1,983,435 - Dsui_1884 0.66 -1.2 1,983,634 - Dsui_1884 0.83 -0.2 1,984,038 - Dsui_1885 0.36 -0.2 1,984,043 - Dsui_1885 0.37 +0.2 1,984,083 - Dsui_1885 0.45 +0.2 1,984,091 + Dsui_1885 0.46 +0.8 1,984,223 - Dsui_1885 0.70 +0.7 1,984,243 - Dsui_1885 0.74 +0.8 1,984,256 + Dsui_1885 0.76 -0.2 1,984,406 + +0.8 1,984,520 + Dsui_1886 0.11 -1.8 1,984,673 + +0.8 1,984,680 - Dsui_1886 0.23 -0.1 1,984,680 - Dsui_1886 0.23 -2.0 1,984,737 + Dsui_1886 0.27 +0.8 1,984,809 - Dsui_1886 0.33 -0.8
Or see this region's nucleotide sequence