Strain Fitness in Dechlorosoma suillum PS around Dsui_1701

Experiment: ALP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1699 and Dsui_1700 are separated by 12 nucleotidesDsui_1700 and Dsui_1701 are separated by 82 nucleotidesDsui_1701 and Dsui_1702 are separated by 204 nucleotidesDsui_1702 and Dsui_1703 are separated by 14 nucleotides Dsui_1699: Dsui_1699 - cation/cationic drug transporter, at 1,787,315 to 1,787,671 _1699 Dsui_1700: Dsui_1700 - putative membrane protein, at 1,787,684 to 1,788,394 _1700 Dsui_1701: Dsui_1701 - restriction endonuclease, at 1,788,477 to 1,789,109 _1701 Dsui_1702: Dsui_1702 - TonB family protein, at 1,789,314 to 1,790,039 _1702 Dsui_1703: Dsui_1703 - ADP-ribose pyrophosphatase, at 1,790,054 to 1,790,602 _1703 Position (kb) 1788 1789 1790Strain fitness (log2 ratio) -3 -2 -1 0 1at 1787.522 kb on + strand, within Dsui_1699at 1787.522 kb on + strand, within Dsui_1699at 1787.530 kb on - strand, within Dsui_1699at 1787.530 kb on - strand, within Dsui_1699at 1787.530 kb on - strand, within Dsui_1699at 1787.535 kb on - strand, within Dsui_1699at 1787.554 kb on - strand, within Dsui_1699at 1787.622 kb on + strand, within Dsui_1699at 1787.636 kb on - strandat 1787.652 kb on + strandat 1787.775 kb on + strand, within Dsui_1700at 1787.793 kb on + strand, within Dsui_1700at 1787.799 kb on + strand, within Dsui_1700at 1788.077 kb on - strand, within Dsui_1700at 1788.096 kb on + strand, within Dsui_1700at 1788.109 kb on - strand, within Dsui_1700at 1788.165 kb on + strand, within Dsui_1700at 1788.171 kb on + strandat 1788.173 kb on - strand, within Dsui_1700at 1788.179 kb on - strand, within Dsui_1700at 1788.249 kb on + strandat 1788.257 kb on - strand, within Dsui_1700at 1788.348 kb on - strandat 1788.372 kb on - strandat 1788.382 kb on - strandat 1788.449 kb on + strandat 1788.482 kb on - strandat 1788.539 kb on - strandat 1788.540 kb on - strandat 1788.544 kb on - strand, within Dsui_1701at 1788.599 kb on + strand, within Dsui_1701at 1788.602 kb on - strand, within Dsui_1701at 1788.717 kb on - strand, within Dsui_1701at 1788.816 kb on + strand, within Dsui_1701at 1788.828 kb on + strandat 1788.914 kb on + strand, within Dsui_1701at 1788.935 kb on + strand, within Dsui_1701at 1789.026 kb on + strand, within Dsui_1701at 1789.034 kb on - strand, within Dsui_1701at 1789.034 kb on - strand, within Dsui_1701at 1789.034 kb on - strand, within Dsui_1701at 1789.210 kb on + strandat 1789.310 kb on + strandat 1789.366 kb on + strandat 1789.385 kb on - strandat 1789.488 kb on + strandat 1789.714 kb on - strand, within Dsui_1702at 1789.747 kb on + strand, within Dsui_1702at 1789.834 kb on + strand, within Dsui_1702at 1789.885 kb on - strand, within Dsui_1702at 1789.973 kb on + strandat 1790.028 kb on - strandat 1790.083 kb on + strandat 1790.083 kb on + strandat 1790.083 kb on + strandat 1790.091 kb on - strandat 1790.091 kb on - strandat 1790.091 kb on - strandat 1790.093 kb on + strandat 1790.102 kb on + strandat 1790.106 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP
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1,787,522 + Dsui_1699 0.58 -0.2
1,787,522 + Dsui_1699 0.58 -1.1
1,787,530 - Dsui_1699 0.60 -0.9
1,787,530 - Dsui_1699 0.60 -0.5
1,787,530 - Dsui_1699 0.60 -0.5
1,787,535 - Dsui_1699 0.62 +0.5
1,787,554 - Dsui_1699 0.67 -0.5
1,787,622 + Dsui_1699 0.86 -1.7
1,787,636 - -1.8
1,787,652 + -0.8
1,787,775 + Dsui_1700 0.13 -0.5
1,787,793 + Dsui_1700 0.15 +0.5
1,787,799 + Dsui_1700 0.16 -0.5
1,788,077 - Dsui_1700 0.55 -1.1
1,788,096 + Dsui_1700 0.58 -0.5
1,788,109 - Dsui_1700 0.60 -0.8
1,788,165 + Dsui_1700 0.68 -1.5
1,788,171 + +0.5
1,788,173 - Dsui_1700 0.69 -0.5
1,788,179 - Dsui_1700 0.70 -0.2
1,788,249 + +0.5
1,788,257 - Dsui_1700 0.81 +0.5
1,788,348 - -0.3
1,788,372 - -1.1
1,788,382 - -1.1
1,788,449 + +0.5
1,788,482 - +1.5
1,788,539 - -1.1
1,788,540 - -2.1
1,788,544 - Dsui_1701 0.11 -0.1
1,788,599 + Dsui_1701 0.19 -1.1
1,788,602 - Dsui_1701 0.20 +0.5
1,788,717 - Dsui_1701 0.38 -1.1
1,788,816 + Dsui_1701 0.54 -0.5
1,788,828 + +0.5
1,788,914 + Dsui_1701 0.69 -0.5
1,788,935 + Dsui_1701 0.72 -2.1
1,789,026 + Dsui_1701 0.87 -1.5
1,789,034 - Dsui_1701 0.88 -1.5
1,789,034 - Dsui_1701 0.88 +0.5
1,789,034 - Dsui_1701 0.88 +0.5
1,789,210 + +0.5
1,789,310 + -0.5
1,789,366 + +1.1
1,789,385 - +0.5
1,789,488 + -0.5
1,789,714 - Dsui_1702 0.55 -2.8
1,789,747 + Dsui_1702 0.60 -1.5
1,789,834 + Dsui_1702 0.72 -0.5
1,789,885 - Dsui_1702 0.79 +0.5
1,789,973 + -1.1
1,790,028 - -0.4
1,790,083 + +0.5
1,790,083 + -0.5
1,790,083 + -0.5
1,790,091 - -0.4
1,790,091 - -0.0
1,790,091 - -0.3
1,790,093 + -0.5
1,790,102 + +0.5
1,790,106 - -0.5

Or see this region's nucleotide sequence