Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1676 and Dsui_1677 are separated by 50 nucleotides Dsui_1677 and Dsui_1678 are separated by 24 nucleotides Dsui_1678 and Dsui_1679 are separated by 1 nucleotides
Dsui_1676: Dsui_1676 - biopolymer transport protein, at 1,762,132 to 1,762,623
_1676
Dsui_1677: Dsui_1677 - ribosomal protein S4, bacterial/organelle type, at 1,762,674 to 1,763,291
_1677
Dsui_1678: Dsui_1678 - hypothetical protein, at 1,763,316 to 1,763,588
_1678
Dsui_1679: Dsui_1679 - Mg chelatase, cobalamin biosynthesis protein CobN, at 1,763,590 to 1,767,693
_1679
Position (kb)
1763
1764 Strain fitness (log2 ratio)
-2
-1
0
1 at 1762.401 kb on + strand at 1762.409 kb on - strand, within Dsui_1676 at 1762.416 kb on + strand, within Dsui_1676 at 1762.417 kb on - strand, within Dsui_1676 at 1762.424 kb on - strand, within Dsui_1676 at 1762.524 kb on + strand, within Dsui_1676 at 1762.524 kb on + strand at 1762.532 kb on - strand, within Dsui_1676 at 1762.557 kb on + strand at 1762.560 kb on - strand, within Dsui_1676 at 1762.565 kb on - strand, within Dsui_1676 at 1762.589 kb on + strand at 1762.705 kb on - strand at 1762.721 kb on - strand at 1762.836 kb on + strand, within Dsui_1677 at 1763.031 kb on + strand, within Dsui_1677 at 1763.294 kb on - strand at 1763.307 kb on + strand at 1763.327 kb on - strand at 1763.422 kb on + strand at 1763.540 kb on - strand, within Dsui_1678 at 1763.596 kb on - strand at 1763.790 kb on + strand at 1763.933 kb on - strand at 1763.933 kb on - strand at 1764.026 kb on - strand at 1764.070 kb on - strand at 1764.320 kb on - strand, within Dsui_1679 at 1764.425 kb on - strand, within Dsui_1679 at 1764.475 kb on - strand, within Dsui_1679
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 1,762,401 + -1.1 1,762,409 - Dsui_1676 0.56 -1.5 1,762,416 + Dsui_1676 0.58 -1.1 1,762,417 - Dsui_1676 0.58 -1.5 1,762,424 - Dsui_1676 0.59 -0.5 1,762,524 + Dsui_1676 0.80 +0.5 1,762,524 + -0.5 1,762,532 - Dsui_1676 0.81 +0.5 1,762,557 + +0.5 1,762,560 - Dsui_1676 0.87 -1.5 1,762,565 - Dsui_1676 0.88 -1.1 1,762,589 + -1.1 1,762,705 - -1.1 1,762,721 - -1.9 1,762,836 + Dsui_1677 0.26 +0.5 1,763,031 + Dsui_1677 0.58 -1.5 1,763,294 - -1.9 1,763,307 + -0.5 1,763,327 - +0.5 1,763,422 + -1.1 1,763,540 - Dsui_1678 0.82 -1.1 1,763,596 - -1.5 1,763,790 + -0.5 1,763,933 - -0.5 1,763,933 - -1.5 1,764,026 - +0.5 1,764,070 - +0.5 1,764,320 - Dsui_1679 0.18 -0.5 1,764,425 - Dsui_1679 0.20 -0.5 1,764,475 - Dsui_1679 0.22 +0.5
Or see this region's nucleotide sequence