Strain Fitness in Dechlorosoma suillum PS around Dsui_1481

Experiment: ALP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1480 and Dsui_1481 are separated by 11 nucleotidesDsui_1481 and Dsui_1482 are separated by 711 nucleotides Dsui_1480: Dsui_1480 - hypothetical protein, at 1,544,898 to 1,545,377 _1480 Dsui_1481: Dsui_1481 - hypothetical protein, at 1,545,389 to 1,546,507 _1481 Dsui_1482: Dsui_1482 - hypothetical protein, at 1,547,219 to 1,547,503 _1482 Position (kb) 1545 1546 1547Strain fitness (log2 ratio) -3 -2 -1 0 1at 1544.623 kb on - strandat 1544.623 kb on - strandat 1544.623 kb on - strandat 1544.623 kb on - strandat 1544.623 kb on - strandat 1544.623 kb on - strandat 1544.637 kb on + strandat 1544.640 kb on - strandat 1544.640 kb on - strandat 1544.669 kb on - strandat 1544.723 kb on - strandat 1544.732 kb on + strandat 1544.780 kb on - strandat 1544.874 kb on - strandat 1544.890 kb on + strandat 1544.890 kb on + strandat 1544.898 kb on - strandat 1544.898 kb on - strandat 1544.992 kb on - strand, within Dsui_1480at 1545.009 kb on - strand, within Dsui_1480at 1545.108 kb on - strand, within Dsui_1480at 1545.136 kb on + strand, within Dsui_1480at 1545.227 kb on - strand, within Dsui_1480at 1545.243 kb on + strand, within Dsui_1480at 1545.256 kb on - strand, within Dsui_1480at 1545.296 kb on + strand, within Dsui_1480at 1545.314 kb on - strand, within Dsui_1480at 1545.333 kb on + strandat 1545.435 kb on + strandat 1545.460 kb on + strandat 1545.479 kb on + strandat 1545.575 kb on + strand, within Dsui_1481at 1545.575 kb on + strand, within Dsui_1481at 1545.646 kb on + strand, within Dsui_1481at 1545.654 kb on - strand, within Dsui_1481at 1545.654 kb on - strand, within Dsui_1481at 1545.656 kb on + strand, within Dsui_1481at 1545.656 kb on + strand, within Dsui_1481at 1545.664 kb on - strand, within Dsui_1481at 1545.664 kb on - strand, within Dsui_1481at 1545.675 kb on + strand, within Dsui_1481at 1545.690 kb on + strand, within Dsui_1481at 1545.698 kb on - strand, within Dsui_1481at 1545.698 kb on - strand, within Dsui_1481at 1545.698 kb on - strand, within Dsui_1481at 1545.721 kb on + strand, within Dsui_1481at 1545.755 kb on - strand, within Dsui_1481at 1545.755 kb on - strand, within Dsui_1481at 1545.755 kb on - strand, within Dsui_1481at 1545.771 kb on + strand, within Dsui_1481at 1545.771 kb on + strand, within Dsui_1481at 1545.779 kb on - strand, within Dsui_1481at 1545.779 kb on - strand, within Dsui_1481at 1545.779 kb on - strand, within Dsui_1481at 1545.814 kb on + strand, within Dsui_1481at 1545.837 kb on + strandat 1545.873 kb on + strand, within Dsui_1481at 1545.881 kb on + strand, within Dsui_1481at 1545.889 kb on - strand, within Dsui_1481at 1545.969 kb on - strand, within Dsui_1481at 1545.969 kb on - strand, within Dsui_1481at 1545.976 kb on + strand, within Dsui_1481at 1545.989 kb on + strand, within Dsui_1481at 1546.187 kb on + strand, within Dsui_1481at 1546.215 kb on + strand, within Dsui_1481at 1546.216 kb on - strand, within Dsui_1481at 1546.272 kb on - strand, within Dsui_1481at 1546.335 kb on + strand, within Dsui_1481at 1546.468 kb on - strandat 1546.530 kb on + strandat 1546.538 kb on - strandat 1546.588 kb on - strandat 1546.645 kb on + strandat 1546.646 kb on - strandat 1546.650 kb on + strandat 1546.652 kb on + strandat 1546.655 kb on - strandat 1546.660 kb on - strandat 1546.711 kb on - strandat 1546.773 kb on + strandat 1546.776 kb on - strandat 1546.776 kb on - strandat 1546.960 kb on + strandat 1546.960 kb on + strandat 1546.999 kb on - strandat 1547.037 kb on + strandat 1547.108 kb on + strandat 1547.241 kb on + strandat 1547.445 kb on + strand, within Dsui_1482at 1547.453 kb on - strand, within Dsui_1482at 1547.453 kb on - strand, within Dsui_1482at 1547.468 kb on - strand, within Dsui_1482at 1547.507 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP
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1,544,623 - +0.5
1,544,623 - -1.1
1,544,623 - +0.5
1,544,623 - -2.4
1,544,623 - -2.1
1,544,623 - -1.1
1,544,637 + -0.5
1,544,640 - -2.5
1,544,640 - -0.5
1,544,669 - -1.1
1,544,723 - -2.4
1,544,732 + -0.9
1,544,780 - +0.5
1,544,874 - -1.1
1,544,890 + -0.5
1,544,890 + -0.5
1,544,898 - -0.5
1,544,898 - -0.5
1,544,992 - Dsui_1480 0.20 +0.5
1,545,009 - Dsui_1480 0.23 +0.5
1,545,108 - Dsui_1480 0.44 -2.5
1,545,136 + Dsui_1480 0.50 -2.1
1,545,227 - Dsui_1480 0.69 -0.5
1,545,243 + Dsui_1480 0.72 -0.5
1,545,256 - Dsui_1480 0.75 +0.5
1,545,296 + Dsui_1480 0.83 -0.5
1,545,314 - Dsui_1480 0.87 -1.1
1,545,333 + +0.5
1,545,435 + -2.4
1,545,460 + +0.5
1,545,479 + -1.1
1,545,575 + Dsui_1481 0.17 +0.5
1,545,575 + Dsui_1481 0.17 -1.1
1,545,646 + Dsui_1481 0.23 +0.5
1,545,654 - Dsui_1481 0.24 -1.1
1,545,654 - Dsui_1481 0.24 +1.5
1,545,656 + Dsui_1481 0.24 -1.1
1,545,656 + Dsui_1481 0.24 +0.5
1,545,664 - Dsui_1481 0.25 +0.5
1,545,664 - Dsui_1481 0.25 -1.1
1,545,675 + Dsui_1481 0.26 +0.5
1,545,690 + Dsui_1481 0.27 -1.1
1,545,698 - Dsui_1481 0.28 +0.5
1,545,698 - Dsui_1481 0.28 -1.9
1,545,698 - Dsui_1481 0.28 +1.5
1,545,721 + Dsui_1481 0.30 -1.1
1,545,755 - Dsui_1481 0.33 -0.4
1,545,755 - Dsui_1481 0.33 -0.5
1,545,755 - Dsui_1481 0.33 -0.3
1,545,771 + Dsui_1481 0.34 -1.1
1,545,771 + Dsui_1481 0.34 +0.5
1,545,779 - Dsui_1481 0.35 +0.5
1,545,779 - Dsui_1481 0.35 -1.1
1,545,779 - Dsui_1481 0.35 -1.1
1,545,814 + Dsui_1481 0.38 +0.5
1,545,837 + +0.5
1,545,873 + Dsui_1481 0.43 -1.5
1,545,881 + Dsui_1481 0.44 -0.1
1,545,889 - Dsui_1481 0.45 +1.5
1,545,969 - Dsui_1481 0.52 -2.9
1,545,969 - Dsui_1481 0.52 +0.5
1,545,976 + Dsui_1481 0.52 +0.5
1,545,989 + Dsui_1481 0.54 +0.5
1,546,187 + Dsui_1481 0.71 +0.5
1,546,215 + Dsui_1481 0.74 -0.5
1,546,216 - Dsui_1481 0.74 -0.5
1,546,272 - Dsui_1481 0.79 -0.5
1,546,335 + Dsui_1481 0.85 +0.5
1,546,468 - -0.4
1,546,530 + -1.1
1,546,538 - -0.2
1,546,588 - +0.5
1,546,645 + -1.9
1,546,646 - -0.4
1,546,650 + -1.5
1,546,652 + -0.5
1,546,655 - -1.0
1,546,660 - -0.7
1,546,711 - -0.1
1,546,773 + -1.1
1,546,776 - +1.5
1,546,776 - -1.1
1,546,960 + -1.5
1,546,960 + +0.5
1,546,999 - +0.5
1,547,037 + +0.5
1,547,108 + -0.5
1,547,241 + -0.1
1,547,445 + Dsui_1482 0.79 -0.2
1,547,453 - Dsui_1482 0.82 +0.5
1,547,453 - Dsui_1482 0.82 -1.1
1,547,468 - Dsui_1482 0.87 -0.5
1,547,507 + -0.6

Or see this region's nucleotide sequence