Strain Fitness in Dechlorosoma suillum PS around Dsui_1404

Experiment: ALP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1402 and Dsui_1403 overlap by 1 nucleotidesDsui_1403 and Dsui_1404 are separated by 19 nucleotidesDsui_1404 and Dsui_1405 overlap by 4 nucleotidesDsui_1405 and Dsui_1406 are separated by 3 nucleotidesDsui_1406 and Dsui_1407 overlap by 8 nucleotides Dsui_1402: Dsui_1402 - ABC-type transport system involved in resistance to organic solvents, auxiliary component, at 1,461,896 to 1,462,525 _1402 Dsui_1403: Dsui_1403 - putative NTP binding protein (contains STAS domain), at 1,462,525 to 1,462,812 _1403 Dsui_1404: Dsui_1404 - ABC-type multidrug transport system, ATPase component, at 1,462,832 to 1,463,755 _1404 Dsui_1405: Dsui_1405 - ABC-type polysaccharide/polyol phosphate export systems, permease component, at 1,463,752 to 1,464,507 _1405 Dsui_1406: Dsui_1406 - putative transcriptional regulator, BolA superfamily, at 1,464,511 to 1,464,756 _1406 Dsui_1407: Dsui_1407 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,464,749 to 1,466,002 _1407 Position (kb) 1462 1463 1464Strain fitness (log2 ratio) -3 -2 -1 0 1at 1461.879 kb on + strandat 1462.045 kb on + strand, within Dsui_1402at 1462.141 kb on + strand, within Dsui_1402at 1462.336 kb on + strand, within Dsui_1402at 1462.514 kb on + strandat 1462.562 kb on + strand, within Dsui_1403at 1462.806 kb on + strandat 1462.807 kb on + strandat 1462.990 kb on + strand, within Dsui_1404at 1463.451 kb on + strand, within Dsui_1404at 1463.888 kb on + strand, within Dsui_1405at 1463.942 kb on + strand, within Dsui_1405at 1464.081 kb on - strand, within Dsui_1405at 1464.153 kb on + strand, within Dsui_1405at 1464.241 kb on - strand, within Dsui_1405at 1464.305 kb on - strand, within Dsui_1405at 1464.307 kb on + strand, within Dsui_1405at 1464.329 kb on + strand, within Dsui_1405at 1464.331 kb on - strand, within Dsui_1405at 1464.374 kb on - strandat 1464.467 kb on + strandat 1464.467 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP
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1,461,879 + -0.9
1,462,045 + Dsui_1402 0.24 -3.1
1,462,141 + Dsui_1402 0.39 -3.2
1,462,336 + Dsui_1402 0.70 -2.8
1,462,514 + -0.4
1,462,562 + Dsui_1403 0.13 -1.6
1,462,806 + -0.5
1,462,807 + -0.0
1,462,990 + Dsui_1404 0.17 -0.4
1,463,451 + Dsui_1404 0.67 -2.0
1,463,888 + Dsui_1405 0.18 -0.1
1,463,942 + Dsui_1405 0.25 -0.2
1,464,081 - Dsui_1405 0.44 -1.6
1,464,153 + Dsui_1405 0.53 -0.2
1,464,241 - Dsui_1405 0.65 -0.6
1,464,305 - Dsui_1405 0.73 +0.4
1,464,307 + Dsui_1405 0.73 -0.4
1,464,329 + Dsui_1405 0.76 -0.2
1,464,331 - Dsui_1405 0.77 +0.4
1,464,374 - +0.4
1,464,467 + -0.0
1,464,467 + -1.1

Or see this region's nucleotide sequence