Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1262 and Dsui_1263 are separated by 2 nucleotides Dsui_1263 and Dsui_1264 are separated by 320 nucleotides Dsui_1264 and Dsui_1265 are separated by 111 nucleotides
Dsui_1262: Dsui_1262 - TRAP transporter, DctM subunit, at 1,325,493 to 1,326,959
_1262
Dsui_1263: Dsui_1263 - TRAP-type mannitol/chloroaromatic compound transport system, small permease component, at 1,326,962 to 1,327,549
_1263
Dsui_1264: Dsui_1264 - fructose-2,6-bisphosphatase, at 1,327,870 to 1,328,520
_1264
Dsui_1265: Dsui_1265 - glycine/serine hydroxymethyltransferase, at 1,328,632 to 1,329,882
_1265
Position (kb)
1327
1328
1329 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1326.910 kb on - strand at 1327.094 kb on - strand, within Dsui_1263 at 1327.108 kb on + strand, within Dsui_1263 at 1327.206 kb on + strand at 1327.206 kb on + strand, within Dsui_1263 at 1327.206 kb on + strand at 1327.214 kb on - strand, within Dsui_1263 at 1327.216 kb on + strand, within Dsui_1263 at 1327.233 kb on + strand, within Dsui_1263 at 1327.241 kb on - strand, within Dsui_1263 at 1327.265 kb on - strand, within Dsui_1263 at 1327.342 kb on + strand, within Dsui_1263 at 1327.347 kb on - strand, within Dsui_1263 at 1327.350 kb on - strand, within Dsui_1263 at 1327.389 kb on - strand, within Dsui_1263 at 1327.438 kb on - strand, within Dsui_1263 at 1327.471 kb on + strand, within Dsui_1263 at 1327.489 kb on - strand, within Dsui_1263 at 1327.537 kb on + strand at 1327.552 kb on - strand at 1327.566 kb on - strand at 1327.617 kb on + strand at 1327.663 kb on + strand at 1327.671 kb on - strand at 1327.729 kb on + strand at 1327.841 kb on + strand at 1327.852 kb on + strand at 1327.860 kb on - strand at 1328.038 kb on + strand, within Dsui_1264 at 1328.122 kb on + strand, within Dsui_1264 at 1328.184 kb on + strand, within Dsui_1264 at 1328.219 kb on + strand, within Dsui_1264 at 1328.229 kb on + strand at 1328.328 kb on + strand, within Dsui_1264 at 1328.339 kb on + strand, within Dsui_1264 at 1328.379 kb on + strand, within Dsui_1264 at 1328.533 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 1,326,910 - -0.3 1,327,094 - Dsui_1263 0.22 -0.5 1,327,108 + Dsui_1263 0.25 -2.0 1,327,206 + +0.3 1,327,206 + Dsui_1263 0.41 -1.7 1,327,206 + +0.3 1,327,214 - Dsui_1263 0.43 -0.3 1,327,216 + Dsui_1263 0.43 -1.2 1,327,233 + Dsui_1263 0.46 -0.7 1,327,241 - Dsui_1263 0.47 -0.2 1,327,265 - Dsui_1263 0.52 -0.3 1,327,342 + Dsui_1263 0.65 -2.5 1,327,347 - Dsui_1263 0.65 -0.6 1,327,350 - Dsui_1263 0.66 -0.4 1,327,389 - Dsui_1263 0.73 +0.5 1,327,438 - Dsui_1263 0.81 -0.5 1,327,471 + Dsui_1263 0.87 +0.3 1,327,489 - Dsui_1263 0.90 -0.5 1,327,537 + -0.7 1,327,552 - -0.7 1,327,566 - -0.1 1,327,617 + -2.0 1,327,663 + -3.5 1,327,671 - -0.4 1,327,729 + -2.2 1,327,841 + +0.3 1,327,852 + -0.7 1,327,860 - +0.3 1,328,038 + Dsui_1264 0.26 -0.7 1,328,122 + Dsui_1264 0.39 +0.3 1,328,184 + Dsui_1264 0.48 -1.2 1,328,219 + Dsui_1264 0.54 -0.1 1,328,229 + +0.3 1,328,328 + Dsui_1264 0.70 -0.5 1,328,339 + Dsui_1264 0.72 -0.7 1,328,379 + Dsui_1264 0.78 -0.7 1,328,533 - -1.2
Or see this region's nucleotide sequence