Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1136 and Dsui_1137 overlap by 4 nucleotides Dsui_1137 and Dsui_1138 overlap by 4 nucleotides Dsui_1138 and Dsui_1139 overlap by 4 nucleotides Dsui_1139 and Dsui_1140 overlap by 4 nucleotides
Dsui_1136: Dsui_1136 - hypothetical protein, at 1,189,325 to 1,190,263
_1136
Dsui_1137: Dsui_1137 - chromate transporter, chromate ion transporter family, at 1,190,260 to 1,191,624
_1137
Dsui_1138: Dsui_1138 - hypothetical protein, at 1,191,621 to 1,192,016
_1138
Dsui_1139: Dsui_1139 - hypothetical protein, at 1,192,013 to 1,192,468
_1139
Dsui_1140: Dsui_1140 - arabinose efflux permease family protein, at 1,192,465 to 1,193,676
_1140
Position (kb)
1190
1191
1192 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1189.260 kb on - strand at 1189.266 kb on + strand at 1189.315 kb on - strand at 1189.392 kb on + strand at 1189.398 kb on + strand at 1189.398 kb on + strand at 1189.398 kb on + strand at 1189.419 kb on - strand, within Dsui_1136 at 1189.434 kb on + strand, within Dsui_1136 at 1189.468 kb on + strand, within Dsui_1136 at 1189.481 kb on - strand, within Dsui_1136 at 1189.483 kb on - strand, within Dsui_1136 at 1189.501 kb on - strand, within Dsui_1136 at 1189.503 kb on - strand, within Dsui_1136 at 1189.673 kb on - strand, within Dsui_1136 at 1189.673 kb on - strand, within Dsui_1136 at 1189.675 kb on + strand, within Dsui_1136 at 1189.749 kb on + strand, within Dsui_1136 at 1189.752 kb on - strand, within Dsui_1136 at 1189.763 kb on - strand, within Dsui_1136 at 1189.770 kb on - strand, within Dsui_1136 at 1189.881 kb on - strand, within Dsui_1136 at 1189.881 kb on - strand, within Dsui_1136 at 1189.896 kb on + strand, within Dsui_1136 at 1190.003 kb on + strand, within Dsui_1136 at 1190.003 kb on + strand, within Dsui_1136 at 1190.011 kb on - strand, within Dsui_1136 at 1190.031 kb on + strand, within Dsui_1136 at 1190.108 kb on + strand, within Dsui_1136 at 1190.189 kb on + strand at 1190.202 kb on - strand at 1190.228 kb on + strand at 1190.236 kb on - strand at 1190.236 kb on - strand at 1190.257 kb on + strand at 1190.276 kb on - strand at 1190.279 kb on - strand at 1190.301 kb on + strand at 1190.301 kb on + strand at 1190.301 kb on + strand at 1190.317 kb on + strand at 1190.374 kb on - strand at 1190.420 kb on - strand, within Dsui_1137 at 1190.456 kb on + strand, within Dsui_1137 at 1190.500 kb on - strand, within Dsui_1137 at 1190.535 kb on - strand, within Dsui_1137 at 1190.540 kb on - strand, within Dsui_1137 at 1190.540 kb on - strand, within Dsui_1137 at 1190.606 kb on - strand, within Dsui_1137 at 1190.612 kb on - strand, within Dsui_1137 at 1190.623 kb on + strand, within Dsui_1137 at 1190.654 kb on - strand, within Dsui_1137 at 1190.858 kb on - strand, within Dsui_1137 at 1191.032 kb on + strand, within Dsui_1137 at 1191.032 kb on + strand, within Dsui_1137 at 1191.032 kb on + strand, within Dsui_1137 at 1191.032 kb on + strand, within Dsui_1137 at 1191.032 kb on + strand, within Dsui_1137 at 1191.040 kb on - strand, within Dsui_1137 at 1191.111 kb on - strand, within Dsui_1137 at 1191.202 kb on - strand, within Dsui_1137 at 1191.246 kb on + strand, within Dsui_1137 at 1191.267 kb on + strand, within Dsui_1137 at 1191.287 kb on + strand, within Dsui_1137 at 1191.332 kb on + strand, within Dsui_1137 at 1191.382 kb on + strand, within Dsui_1137 at 1191.431 kb on + strand, within Dsui_1137 at 1191.431 kb on + strand, within Dsui_1137 at 1191.439 kb on - strand, within Dsui_1137 at 1191.461 kb on - strand, within Dsui_1137 at 1191.524 kb on + strand at 1191.531 kb on - strand at 1191.541 kb on + strand at 1191.543 kb on - strand at 1191.657 kb on - strand at 1191.739 kb on - strand, within Dsui_1138 at 1191.741 kb on - strand at 1191.743 kb on + strand, within Dsui_1138 at 1191.773 kb on - strand, within Dsui_1138 at 1191.793 kb on + strand, within Dsui_1138 at 1191.796 kb on + strand, within Dsui_1138 at 1191.804 kb on - strand, within Dsui_1138 at 1191.856 kb on - strand, within Dsui_1138 at 1191.927 kb on - strand, within Dsui_1138 at 1191.960 kb on - strand, within Dsui_1138 at 1191.973 kb on + strand, within Dsui_1138 at 1192.026 kb on + strand at 1192.173 kb on + strand, within Dsui_1139 at 1192.174 kb on - strand, within Dsui_1139 at 1192.182 kb on - strand, within Dsui_1139 at 1192.206 kb on + strand, within Dsui_1139 at 1192.236 kb on - strand, within Dsui_1139 at 1192.241 kb on - strand, within Dsui_1139 at 1192.252 kb on + strand, within Dsui_1139 at 1192.327 kb on - strand, within Dsui_1139 at 1192.406 kb on + strand, within Dsui_1139 at 1192.450 kb on + strand at 1192.501 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 1,189,260 - -1.6 1,189,266 + -2.0 1,189,315 - -0.6 1,189,392 + -0.2 1,189,398 + -0.4 1,189,398 + +0.1 1,189,398 + -0.1 1,189,419 - Dsui_1136 0.10 +0.4 1,189,434 + Dsui_1136 0.12 -0.2 1,189,468 + Dsui_1136 0.15 -0.2 1,189,481 - Dsui_1136 0.17 +0.4 1,189,483 - Dsui_1136 0.17 -1.2 1,189,501 - Dsui_1136 0.19 +0.4 1,189,503 - Dsui_1136 0.19 -1.2 1,189,673 - Dsui_1136 0.37 +0.4 1,189,673 - Dsui_1136 0.37 +0.4 1,189,675 + Dsui_1136 0.37 -0.2 1,189,749 + Dsui_1136 0.45 -0.1 1,189,752 - Dsui_1136 0.45 -0.6 1,189,763 - Dsui_1136 0.47 +0.4 1,189,770 - Dsui_1136 0.47 -1.2 1,189,881 - Dsui_1136 0.59 +0.4 1,189,881 - Dsui_1136 0.59 -1.2 1,189,896 + Dsui_1136 0.61 -0.1 1,190,003 + Dsui_1136 0.72 +0.0 1,190,003 + Dsui_1136 0.72 -0.1 1,190,011 - Dsui_1136 0.73 -0.6 1,190,031 + Dsui_1136 0.75 -0.6 1,190,108 + Dsui_1136 0.83 -0.4 1,190,189 + -0.1 1,190,202 - -0.6 1,190,228 + -0.6 1,190,236 - -1.6 1,190,236 - +0.4 1,190,257 + +0.4 1,190,276 - -1.2 1,190,279 - -2.1 1,190,301 + +0.4 1,190,301 + -0.6 1,190,301 + -2.0 1,190,317 + -0.4 1,190,374 - -0.6 1,190,420 - Dsui_1137 0.12 +0.4 1,190,456 + Dsui_1137 0.14 -2.6 1,190,500 - Dsui_1137 0.18 +0.4 1,190,535 - Dsui_1137 0.20 -1.2 1,190,540 - Dsui_1137 0.21 -0.6 1,190,540 - Dsui_1137 0.21 +0.4 1,190,606 - Dsui_1137 0.25 -0.6 1,190,612 - Dsui_1137 0.26 +0.4 1,190,623 + Dsui_1137 0.27 -1.2 1,190,654 - Dsui_1137 0.29 -2.0 1,190,858 - Dsui_1137 0.44 -1.6 1,191,032 + Dsui_1137 0.57 -1.2 1,191,032 + Dsui_1137 0.57 +0.2 1,191,032 + Dsui_1137 0.57 -0.6 1,191,032 + Dsui_1137 0.57 -2.4 1,191,032 + Dsui_1137 0.57 -2.8 1,191,040 - Dsui_1137 0.57 +0.4 1,191,111 - Dsui_1137 0.62 +0.4 1,191,202 - Dsui_1137 0.69 -1.2 1,191,246 + Dsui_1137 0.72 -0.1 1,191,267 + Dsui_1137 0.74 -0.4 1,191,287 + Dsui_1137 0.75 -1.0 1,191,332 + Dsui_1137 0.79 +0.4 1,191,382 + Dsui_1137 0.82 +0.9 1,191,431 + Dsui_1137 0.86 -1.5 1,191,431 + Dsui_1137 0.86 -1.2 1,191,439 - Dsui_1137 0.86 -1.6 1,191,461 - Dsui_1137 0.88 +0.4 1,191,524 + +0.4 1,191,531 - +0.4 1,191,541 + -1.5 1,191,543 - +0.4 1,191,657 - +0.4 1,191,739 - Dsui_1138 0.30 -2.2 1,191,741 - +0.4 1,191,743 + Dsui_1138 0.31 -1.6 1,191,773 - Dsui_1138 0.38 +0.4 1,191,793 + Dsui_1138 0.43 +0.4 1,191,796 + Dsui_1138 0.44 -0.6 1,191,804 - Dsui_1138 0.46 +0.4 1,191,856 - Dsui_1138 0.59 -0.6 1,191,927 - Dsui_1138 0.77 -1.6 1,191,960 - Dsui_1138 0.86 -0.6 1,191,973 + Dsui_1138 0.89 -0.2 1,192,026 + -0.6 1,192,173 + Dsui_1139 0.35 +0.4 1,192,174 - Dsui_1139 0.35 +0.4 1,192,182 - Dsui_1139 0.37 -0.6 1,192,206 + Dsui_1139 0.42 +0.4 1,192,236 - Dsui_1139 0.49 -1.2 1,192,241 - Dsui_1139 0.50 +0.4 1,192,252 + Dsui_1139 0.52 -0.6 1,192,327 - Dsui_1139 0.69 +0.4 1,192,406 + Dsui_1139 0.86 +0.4 1,192,450 + +0.4 1,192,501 - -1.2
Or see this region's nucleotide sequence