Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1128 and Dsui_1129 overlap by 4 nucleotides Dsui_1129 and Dsui_1130 are separated by 10 nucleotides
Dsui_1128: Dsui_1128 - outer membrane protein, at 1,179,635 to 1,180,885
_1128
Dsui_1129: Dsui_1129 - acetyl/propionyl-CoA carboxylase, alpha subunit, at 1,180,882 to 1,182,114
_1129
Dsui_1130: Dsui_1130 - heavy metal efflux pump, cobalt-zinc-cadmium, at 1,182,125 to 1,185,283
_1130
Position (kb)
1180
1181
1182
1183 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1179.921 kb on + strand, within Dsui_1128 at 1179.921 kb on + strand, within Dsui_1128 at 1179.991 kb on - strand, within Dsui_1128 at 1180.002 kb on - strand, within Dsui_1128 at 1180.016 kb on - strand, within Dsui_1128 at 1180.044 kb on + strand, within Dsui_1128 at 1180.207 kb on + strand, within Dsui_1128 at 1180.215 kb on - strand, within Dsui_1128 at 1180.215 kb on - strand, within Dsui_1128 at 1180.239 kb on + strand, within Dsui_1128 at 1180.247 kb on - strand, within Dsui_1128 at 1180.247 kb on - strand, within Dsui_1128 at 1180.251 kb on - strand, within Dsui_1128 at 1180.252 kb on - strand, within Dsui_1128 at 1180.257 kb on + strand, within Dsui_1128 at 1180.320 kb on - strand, within Dsui_1128 at 1180.335 kb on + strand, within Dsui_1128 at 1180.336 kb on - strand, within Dsui_1128 at 1180.359 kb on + strand, within Dsui_1128 at 1180.359 kb on + strand, within Dsui_1128 at 1180.367 kb on - strand, within Dsui_1128 at 1180.436 kb on - strand, within Dsui_1128 at 1180.475 kb on - strand, within Dsui_1128 at 1180.476 kb on - strand, within Dsui_1128 at 1180.562 kb on + strand, within Dsui_1128 at 1180.575 kb on + strand, within Dsui_1128 at 1180.622 kb on - strand, within Dsui_1128 at 1180.624 kb on + strand, within Dsui_1128 at 1180.659 kb on - strand, within Dsui_1128 at 1180.659 kb on - strand, within Dsui_1128 at 1180.659 kb on - strand, within Dsui_1128 at 1180.671 kb on - strand, within Dsui_1128 at 1180.672 kb on - strand, within Dsui_1128 at 1180.690 kb on + strand, within Dsui_1128 at 1180.720 kb on - strand, within Dsui_1128 at 1180.720 kb on - strand, within Dsui_1128 at 1180.721 kb on - strand, within Dsui_1128 at 1180.737 kb on - strand, within Dsui_1128 at 1180.852 kb on + strand at 1180.874 kb on - strand at 1180.875 kb on - strand at 1181.138 kb on + strand, within Dsui_1129 at 1181.216 kb on + strand, within Dsui_1129 at 1181.302 kb on + strand, within Dsui_1129 at 1181.357 kb on - strand, within Dsui_1129 at 1181.413 kb on - strand, within Dsui_1129 at 1181.541 kb on + strand, within Dsui_1129 at 1181.547 kb on + strand, within Dsui_1129 at 1181.552 kb on + strand, within Dsui_1129 at 1181.621 kb on + strand, within Dsui_1129 at 1181.963 kb on + strand, within Dsui_1129 at 1181.971 kb on - strand, within Dsui_1129 at 1181.978 kb on + strand, within Dsui_1129 at 1182.182 kb on + strand at 1182.192 kb on + strand at 1182.237 kb on - strand at 1182.296 kb on + strand at 1182.361 kb on + strand at 1182.362 kb on + strand at 1182.364 kb on - strand at 1182.402 kb on - strand at 1182.525 kb on - strand, within Dsui_1130 at 1182.527 kb on + strand, within Dsui_1130 at 1182.530 kb on - strand, within Dsui_1130 at 1182.541 kb on - strand, within Dsui_1130 at 1182.554 kb on + strand, within Dsui_1130 at 1182.564 kb on + strand, within Dsui_1130 at 1182.564 kb on + strand, within Dsui_1130 at 1182.572 kb on - strand, within Dsui_1130 at 1182.620 kb on + strand, within Dsui_1130 at 1182.620 kb on + strand, within Dsui_1130 at 1182.620 kb on + strand, within Dsui_1130 at 1182.620 kb on + strand, within Dsui_1130 at 1182.671 kb on - strand, within Dsui_1130 at 1182.681 kb on - strand, within Dsui_1130 at 1182.711 kb on - strand, within Dsui_1130 at 1182.714 kb on + strand, within Dsui_1130 at 1182.722 kb on - strand, within Dsui_1130 at 1182.745 kb on - strand, within Dsui_1130 at 1182.763 kb on + strand, within Dsui_1130 at 1182.829 kb on - strand, within Dsui_1130 at 1182.945 kb on + strand, within Dsui_1130 at 1182.953 kb on - strand, within Dsui_1130 at 1182.953 kb on - strand, within Dsui_1130 at 1182.968 kb on - strand, within Dsui_1130 at 1182.971 kb on + strand, within Dsui_1130 at 1183.055 kb on + strand, within Dsui_1130 at 1183.088 kb on + strand, within Dsui_1130 at 1183.092 kb on + strand, within Dsui_1130 at 1183.100 kb on - strand, within Dsui_1130 at 1183.109 kb on + strand, within Dsui_1130
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 1,179,921 + Dsui_1128 0.23 -1.6 1,179,921 + Dsui_1128 0.23 +0.4 1,179,991 - Dsui_1128 0.28 -1.6 1,180,002 - Dsui_1128 0.29 -0.6 1,180,016 - Dsui_1128 0.30 -1.2 1,180,044 + Dsui_1128 0.33 -1.0 1,180,207 + Dsui_1128 0.46 -0.6 1,180,215 - Dsui_1128 0.46 +1.9 1,180,215 - Dsui_1128 0.46 -0.1 1,180,239 + Dsui_1128 0.48 -0.6 1,180,247 - Dsui_1128 0.49 +0.4 1,180,247 - Dsui_1128 0.49 -1.8 1,180,251 - Dsui_1128 0.49 -3.6 1,180,252 - Dsui_1128 0.49 +0.4 1,180,257 + Dsui_1128 0.50 +0.4 1,180,320 - Dsui_1128 0.55 -2.2 1,180,335 + Dsui_1128 0.56 +1.9 1,180,336 - Dsui_1128 0.56 +0.4 1,180,359 + Dsui_1128 0.58 +0.4 1,180,359 + Dsui_1128 0.58 -1.2 1,180,367 - Dsui_1128 0.59 -2.5 1,180,436 - Dsui_1128 0.64 -0.6 1,180,475 - Dsui_1128 0.67 -1.2 1,180,476 - Dsui_1128 0.67 +0.4 1,180,562 + Dsui_1128 0.74 -3.0 1,180,575 + Dsui_1128 0.75 -0.5 1,180,622 - Dsui_1128 0.79 +0.4 1,180,624 + Dsui_1128 0.79 -0.6 1,180,659 - Dsui_1128 0.82 -0.6 1,180,659 - Dsui_1128 0.82 -2.0 1,180,659 - Dsui_1128 0.82 -1.6 1,180,671 - Dsui_1128 0.83 +0.9 1,180,672 - Dsui_1128 0.83 -0.6 1,180,690 + Dsui_1128 0.84 -1.2 1,180,720 - Dsui_1128 0.87 +0.4 1,180,720 - Dsui_1128 0.87 -0.6 1,180,721 - Dsui_1128 0.87 -0.6 1,180,737 - Dsui_1128 0.88 -1.2 1,180,852 + +0.4 1,180,874 - -2.5 1,180,875 - +0.4 1,181,138 + Dsui_1129 0.21 -0.6 1,181,216 + Dsui_1129 0.27 -2.0 1,181,302 + Dsui_1129 0.34 +0.4 1,181,357 - Dsui_1129 0.39 -2.0 1,181,413 - Dsui_1129 0.43 -0.6 1,181,541 + Dsui_1129 0.53 +0.4 1,181,547 + Dsui_1129 0.54 +1.4 1,181,552 + Dsui_1129 0.54 -0.4 1,181,621 + Dsui_1129 0.60 -1.2 1,181,963 + Dsui_1129 0.88 +0.4 1,181,971 - Dsui_1129 0.88 +0.4 1,181,978 + Dsui_1129 0.89 +1.4 1,182,182 + -1.2 1,182,192 + -1.1 1,182,237 - -1.2 1,182,296 + +0.4 1,182,361 + -0.6 1,182,362 + -2.5 1,182,364 - -0.6 1,182,402 - -1.6 1,182,525 - Dsui_1130 0.13 +0.4 1,182,527 + Dsui_1130 0.13 -0.6 1,182,530 - Dsui_1130 0.13 -1.6 1,182,541 - Dsui_1130 0.13 +0.4 1,182,554 + Dsui_1130 0.14 -1.2 1,182,564 + Dsui_1130 0.14 -1.3 1,182,564 + Dsui_1130 0.14 -0.9 1,182,572 - Dsui_1130 0.14 +0.4 1,182,620 + Dsui_1130 0.16 -1.6 1,182,620 + Dsui_1130 0.16 -2.5 1,182,620 + Dsui_1130 0.16 -2.5 1,182,620 + Dsui_1130 0.16 +1.4 1,182,671 - Dsui_1130 0.17 -2.0 1,182,681 - Dsui_1130 0.18 +0.4 1,182,711 - Dsui_1130 0.19 -1.6 1,182,714 + Dsui_1130 0.19 -1.8 1,182,722 - Dsui_1130 0.19 +0.4 1,182,745 - Dsui_1130 0.20 -0.6 1,182,763 + Dsui_1130 0.20 -1.6 1,182,829 - Dsui_1130 0.22 -2.8 1,182,945 + Dsui_1130 0.26 +0.4 1,182,953 - Dsui_1130 0.26 +0.4 1,182,953 - Dsui_1130 0.26 +0.4 1,182,968 - Dsui_1130 0.27 -3.0 1,182,971 + Dsui_1130 0.27 -1.6 1,183,055 + Dsui_1130 0.29 -1.1 1,183,088 + Dsui_1130 0.30 -1.2 1,183,092 + Dsui_1130 0.31 -1.0 1,183,100 - Dsui_1130 0.31 +0.4 1,183,109 + Dsui_1130 0.31 -0.1
Or see this region's nucleotide sequence