Strain Fitness in Dechlorosoma suillum PS around Dsui_0989

Experiment: ALP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0987 and Dsui_0988 are separated by 91 nucleotidesDsui_0988 and Dsui_0989 overlap by 4 nucleotidesDsui_0989 and Dsui_0990 are separated by 156 nucleotides Dsui_0987: Dsui_0987 - Zn-dependent hydrolase, glyoxylase, at 1,014,671 to 1,015,606 _0987 Dsui_0988: Dsui_0988 - hypothetical protein, at 1,015,698 to 1,016,546 _0988 Dsui_0989: Dsui_0989 - amidohydrolase, at 1,016,543 to 1,017,706 _0989 Dsui_0990: Dsui_0990 - putative P-loop-containing kinase, at 1,017,863 to 1,018,735 _0990 Position (kb) 1016 1017 1018Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1015.545 kb on + strandat 1015.585 kb on + strandat 1015.701 kb on + strandat 1015.708 kb on + strandat 1015.708 kb on + strandat 1015.708 kb on + strandat 1015.764 kb on + strandat 1015.764 kb on + strandat 1015.772 kb on - strandat 1015.772 kb on - strandat 1015.833 kb on - strand, within Dsui_0988at 1015.833 kb on - strand, within Dsui_0988at 1015.841 kb on + strand, within Dsui_0988at 1015.970 kb on + strand, within Dsui_0988at 1015.980 kb on + strand, within Dsui_0988at 1016.006 kb on - strand, within Dsui_0988at 1016.115 kb on + strand, within Dsui_0988at 1016.115 kb on + strand, within Dsui_0988at 1016.169 kb on - strand, within Dsui_0988at 1016.216 kb on + strand, within Dsui_0988at 1016.285 kb on - strand, within Dsui_0988at 1016.466 kb on + strandat 1016.474 kb on - strandat 1016.479 kb on + strandat 1016.487 kb on - strandat 1016.513 kb on + strandat 1016.541 kb on + strandat 1016.646 kb on - strandat 1016.753 kb on - strand, within Dsui_0989at 1016.762 kb on + strand, within Dsui_0989at 1016.836 kb on + strand, within Dsui_0989at 1016.836 kb on + strand, within Dsui_0989at 1016.951 kb on + strand, within Dsui_0989at 1016.956 kb on + strand, within Dsui_0989at 1016.956 kb on + strand, within Dsui_0989at 1016.994 kb on + strandat 1017.002 kb on - strand, within Dsui_0989at 1017.009 kb on + strand, within Dsui_0989at 1017.034 kb on + strand, within Dsui_0989at 1017.064 kb on - strand, within Dsui_0989at 1017.066 kb on + strand, within Dsui_0989at 1017.233 kb on + strand, within Dsui_0989at 1017.331 kb on + strand, within Dsui_0989at 1017.332 kb on - strand, within Dsui_0989at 1017.566 kb on - strand, within Dsui_0989at 1017.690 kb on + strandat 1017.708 kb on - strandat 1017.743 kb on + strandat 1017.753 kb on + strandat 1017.804 kb on + strandat 1017.809 kb on + strandat 1017.809 kb on + strandat 1017.809 kb on + strandat 1018.374 kb on + strand, within Dsui_0990

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP
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1,015,545 + +0.3
1,015,585 + +0.0
1,015,701 + -0.2
1,015,708 + -0.2
1,015,708 + -0.2
1,015,708 + -0.2
1,015,764 + -0.5
1,015,764 + -0.2
1,015,772 - +0.5
1,015,772 - -0.5
1,015,833 - Dsui_0988 0.16 -1.5
1,015,833 - Dsui_0988 0.16 -1.1
1,015,841 + Dsui_0988 0.17 +0.1
1,015,970 + Dsui_0988 0.32 -0.5
1,015,980 + Dsui_0988 0.33 +0.3
1,016,006 - Dsui_0988 0.36 -2.3
1,016,115 + Dsui_0988 0.49 +0.3
1,016,115 + Dsui_0988 0.49 +0.1
1,016,169 - Dsui_0988 0.55 +0.5
1,016,216 + Dsui_0988 0.61 +0.1
1,016,285 - Dsui_0988 0.69 -1.2
1,016,466 + -1.5
1,016,474 - -0.2
1,016,479 + +0.1
1,016,487 - +0.2
1,016,513 + -0.2
1,016,541 + -0.9
1,016,646 - +0.3
1,016,753 - Dsui_0989 0.18 +0.1
1,016,762 + Dsui_0989 0.19 -0.6
1,016,836 + Dsui_0989 0.25 +2.9
1,016,836 + Dsui_0989 0.25 -0.0
1,016,951 + Dsui_0989 0.35 +0.5
1,016,956 + Dsui_0989 0.35 +0.5
1,016,956 + Dsui_0989 0.35 -0.5
1,016,994 + +0.5
1,017,002 - Dsui_0989 0.39 +0.1
1,017,009 + Dsui_0989 0.40 +0.0
1,017,034 + Dsui_0989 0.42 -2.0
1,017,064 - Dsui_0989 0.45 +0.1
1,017,066 + Dsui_0989 0.45 -0.2
1,017,233 + Dsui_0989 0.59 +0.5
1,017,331 + Dsui_0989 0.68 -3.0
1,017,332 - Dsui_0989 0.68 +0.2
1,017,566 - Dsui_0989 0.88 +0.1
1,017,690 + +0.5
1,017,708 - +0.0
1,017,743 + -0.9
1,017,753 + -0.7
1,017,804 + -1.0
1,017,809 + -0.2
1,017,809 + -0.4
1,017,809 + -0.1
1,018,374 + Dsui_0990 0.59 +0.1

Or see this region's nucleotide sequence