Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0987 and Dsui_0988 are separated by 91 nucleotides Dsui_0988 and Dsui_0989 overlap by 4 nucleotides Dsui_0989 and Dsui_0990 are separated by 156 nucleotides
Dsui_0987: Dsui_0987 - Zn-dependent hydrolase, glyoxylase, at 1,014,671 to 1,015,606
_0987
Dsui_0988: Dsui_0988 - hypothetical protein, at 1,015,698 to 1,016,546
_0988
Dsui_0989: Dsui_0989 - amidohydrolase, at 1,016,543 to 1,017,706
_0989
Dsui_0990: Dsui_0990 - putative P-loop-containing kinase, at 1,017,863 to 1,018,735
_0990
Position (kb)
1016
1017
1018 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1015.545 kb on + strand at 1015.585 kb on + strand at 1015.701 kb on + strand at 1015.708 kb on + strand at 1015.708 kb on + strand at 1015.708 kb on + strand at 1015.764 kb on + strand at 1015.764 kb on + strand at 1015.772 kb on - strand at 1015.772 kb on - strand at 1015.833 kb on - strand, within Dsui_0988 at 1015.833 kb on - strand, within Dsui_0988 at 1015.841 kb on + strand, within Dsui_0988 at 1015.970 kb on + strand, within Dsui_0988 at 1015.980 kb on + strand, within Dsui_0988 at 1016.006 kb on - strand, within Dsui_0988 at 1016.115 kb on + strand, within Dsui_0988 at 1016.115 kb on + strand, within Dsui_0988 at 1016.169 kb on - strand, within Dsui_0988 at 1016.216 kb on + strand, within Dsui_0988 at 1016.285 kb on - strand, within Dsui_0988 at 1016.466 kb on + strand at 1016.474 kb on - strand at 1016.479 kb on + strand at 1016.487 kb on - strand at 1016.513 kb on + strand at 1016.541 kb on + strand at 1016.646 kb on - strand at 1016.753 kb on - strand, within Dsui_0989 at 1016.762 kb on + strand, within Dsui_0989 at 1016.836 kb on + strand, within Dsui_0989 at 1016.836 kb on + strand, within Dsui_0989 at 1016.951 kb on + strand, within Dsui_0989 at 1016.956 kb on + strand, within Dsui_0989 at 1016.956 kb on + strand, within Dsui_0989 at 1016.994 kb on + strand at 1017.002 kb on - strand, within Dsui_0989 at 1017.009 kb on + strand, within Dsui_0989 at 1017.034 kb on + strand, within Dsui_0989 at 1017.064 kb on - strand, within Dsui_0989 at 1017.066 kb on + strand, within Dsui_0989 at 1017.233 kb on + strand, within Dsui_0989 at 1017.331 kb on + strand, within Dsui_0989 at 1017.332 kb on - strand, within Dsui_0989 at 1017.566 kb on - strand, within Dsui_0989 at 1017.690 kb on + strand at 1017.708 kb on - strand at 1017.743 kb on + strand at 1017.753 kb on + strand at 1017.804 kb on + strand at 1017.809 kb on + strand at 1017.809 kb on + strand at 1017.809 kb on + strand at 1018.374 kb on + strand, within Dsui_0990
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 1,015,545 + +0.3 1,015,585 + +0.0 1,015,701 + -0.2 1,015,708 + -0.2 1,015,708 + -0.2 1,015,708 + -0.2 1,015,764 + -0.5 1,015,764 + -0.2 1,015,772 - +0.5 1,015,772 - -0.5 1,015,833 - Dsui_0988 0.16 -1.5 1,015,833 - Dsui_0988 0.16 -1.1 1,015,841 + Dsui_0988 0.17 +0.1 1,015,970 + Dsui_0988 0.32 -0.5 1,015,980 + Dsui_0988 0.33 +0.3 1,016,006 - Dsui_0988 0.36 -2.3 1,016,115 + Dsui_0988 0.49 +0.3 1,016,115 + Dsui_0988 0.49 +0.1 1,016,169 - Dsui_0988 0.55 +0.5 1,016,216 + Dsui_0988 0.61 +0.1 1,016,285 - Dsui_0988 0.69 -1.2 1,016,466 + -1.5 1,016,474 - -0.2 1,016,479 + +0.1 1,016,487 - +0.2 1,016,513 + -0.2 1,016,541 + -0.9 1,016,646 - +0.3 1,016,753 - Dsui_0989 0.18 +0.1 1,016,762 + Dsui_0989 0.19 -0.6 1,016,836 + Dsui_0989 0.25 +2.9 1,016,836 + Dsui_0989 0.25 -0.0 1,016,951 + Dsui_0989 0.35 +0.5 1,016,956 + Dsui_0989 0.35 +0.5 1,016,956 + Dsui_0989 0.35 -0.5 1,016,994 + +0.5 1,017,002 - Dsui_0989 0.39 +0.1 1,017,009 + Dsui_0989 0.40 +0.0 1,017,034 + Dsui_0989 0.42 -2.0 1,017,064 - Dsui_0989 0.45 +0.1 1,017,066 + Dsui_0989 0.45 -0.2 1,017,233 + Dsui_0989 0.59 +0.5 1,017,331 + Dsui_0989 0.68 -3.0 1,017,332 - Dsui_0989 0.68 +0.2 1,017,566 - Dsui_0989 0.88 +0.1 1,017,690 + +0.5 1,017,708 - +0.0 1,017,743 + -0.9 1,017,753 + -0.7 1,017,804 + -1.0 1,017,809 + -0.2 1,017,809 + -0.4 1,017,809 + -0.1 1,018,374 + Dsui_0990 0.59 +0.1
Or see this region's nucleotide sequence