Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0892 and Dsui_0893 overlap by 4 nucleotides Dsui_0893 and Dsui_0894 are separated by 0 nucleotides
Dsui_0892: Dsui_0892 - rod shape-determining protein RodA, at 906,137 to 907,237
_0892
Dsui_0893: Dsui_0893 - rare lipoprotein A, at 907,234 to 908,274
_0893
Dsui_0894: Dsui_0894 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 908,275 to 910,899
_0894
Position (kb) 907
908
909 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 907.268 kb on - strand at 907.276 kb on - strand at 907.477 kb on + strand, within Dsui_0893 at 907.505 kb on + strand, within Dsui_0893 at 907.510 kb on + strand, within Dsui_0893 at 907.542 kb on + strand, within Dsui_0893 at 907.652 kb on + strand, within Dsui_0893 at 907.665 kb on - strand at 907.988 kb on - strand, within Dsui_0893 at 908.111 kb on - strand, within Dsui_0893 at 908.111 kb on - strand, within Dsui_0893 at 908.181 kb on + strand at 908.186 kb on + strand at 908.237 kb on - strand at 908.247 kb on - strand at 908.281 kb on - strand at 908.342 kb on + strand at 908.375 kb on + strand at 908.375 kb on + strand at 908.383 kb on - strand at 908.422 kb on - strand at 908.428 kb on + strand at 908.428 kb on + strand at 908.528 kb on + strand at 908.592 kb on + strand, within Dsui_0894 at 908.649 kb on - strand, within Dsui_0894 at 908.670 kb on + strand, within Dsui_0894 at 908.761 kb on + strand, within Dsui_0894 at 908.849 kb on + strand, within Dsui_0894 at 908.910 kb on + strand, within Dsui_0894 at 908.953 kb on - strand, within Dsui_0894 at 909.014 kb on + strand, within Dsui_0894 at 909.024 kb on + strand, within Dsui_0894 at 909.031 kb on + strand, within Dsui_0894 at 909.039 kb on - strand, within Dsui_0894 at 909.097 kb on - strand, within Dsui_0894 at 909.115 kb on + strand, within Dsui_0894 at 909.115 kb on + strand, within Dsui_0894 at 909.115 kb on + strand, within Dsui_0894 at 909.152 kb on - strand, within Dsui_0894 at 909.179 kb on - strand at 909.203 kb on - strand at 909.215 kb on - strand, within Dsui_0894 at 909.237 kb on - strand, within Dsui_0894 at 909.269 kb on - strand, within Dsui_0894
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 907,268 - -0.7 907,276 - -1.1 907,477 + Dsui_0893 0.23 -0.4 907,505 + Dsui_0893 0.26 +1.1 907,510 + Dsui_0893 0.27 -0.7 907,542 + Dsui_0893 0.30 -0.4 907,652 + Dsui_0893 0.40 -0.8 907,665 - +0.4 907,988 - Dsui_0893 0.72 -1.6 908,111 - Dsui_0893 0.84 -1.6 908,111 - Dsui_0893 0.84 -0.1 908,181 + -0.5 908,186 + -0.1 908,237 - -2.1 908,247 - -0.1 908,281 - -0.9 908,342 + -0.4 908,375 + +0.3 908,375 + -0.6 908,383 - -1.9 908,422 - +0.4 908,428 + -0.9 908,428 + +0.3 908,528 + +3.6 908,592 + Dsui_0894 0.12 -1.9 908,649 - Dsui_0894 0.14 -2.1 908,670 + Dsui_0894 0.15 -0.6 908,761 + Dsui_0894 0.19 +0.4 908,849 + Dsui_0894 0.22 -0.6 908,910 + Dsui_0894 0.24 -0.6 908,953 - Dsui_0894 0.26 +0.4 909,014 + Dsui_0894 0.28 -0.6 909,024 + Dsui_0894 0.29 -1.6 909,031 + Dsui_0894 0.29 -1.6 909,039 - Dsui_0894 0.29 -0.6 909,097 - Dsui_0894 0.31 +0.4 909,115 + Dsui_0894 0.32 -1.6 909,115 + Dsui_0894 0.32 +0.4 909,115 + Dsui_0894 0.32 +0.4 909,152 - Dsui_0894 0.33 -1.6 909,179 - +0.4 909,203 - +0.4 909,215 - Dsui_0894 0.36 +0.4 909,237 - Dsui_0894 0.37 +0.4 909,269 - Dsui_0894 0.38 -1.1
Or see this region's nucleotide sequence