Strain Fitness in Dechlorosoma suillum PS around Dsui_0839

Experiment: ALP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0838 and Dsui_0839 are separated by 179 nucleotidesDsui_0839 and Dsui_0840 are separated by 31 nucleotides Dsui_0838: Dsui_0838 - hypothetical protein, at 852,576 to 853,673 _0838 Dsui_0839: Dsui_0839 - ABC-type branched-chain amino acid transport system, periplasmic component, at 853,853 to 855,007 _0839 Dsui_0840: Dsui_0840 - ABC-type branched-chain amino acid transport system, periplasmic component, at 855,039 to 856,208 _0840 Position (kb) 853 854 855 856Strain fitness (log2 ratio) -3 -2 -1 0 1at 852.860 kb on + strandat 852.860 kb on + strand, within Dsui_0838at 852.929 kb on + strand, within Dsui_0838at 852.950 kb on + strandat 853.004 kb on + strandat 853.058 kb on - strandat 853.147 kb on + strand, within Dsui_0838at 853.147 kb on + strand, within Dsui_0838at 853.188 kb on - strand, within Dsui_0838at 853.226 kb on - strand, within Dsui_0838at 853.241 kb on - strandat 853.243 kb on + strand, within Dsui_0838at 853.244 kb on + strand, within Dsui_0838at 853.252 kb on - strandat 853.253 kb on + strand, within Dsui_0838at 853.263 kb on + strand, within Dsui_0838at 853.289 kb on - strand, within Dsui_0838at 853.296 kb on - strandat 853.425 kb on + strand, within Dsui_0838at 853.460 kb on + strand, within Dsui_0838at 853.485 kb on + strand, within Dsui_0838at 853.485 kb on + strand, within Dsui_0838at 853.488 kb on - strand, within Dsui_0838at 853.535 kb on + strand, within Dsui_0838at 853.575 kb on - strandat 853.593 kb on - strandat 853.798 kb on + strandat 853.798 kb on + strandat 853.850 kb on - strandat 853.924 kb on - strandat 853.938 kb on + strandat 853.959 kb on + strandat 854.013 kb on - strandat 854.057 kb on + strand, within Dsui_0839at 854.057 kb on + strand, within Dsui_0839at 854.103 kb on - strandat 854.112 kb on + strand, within Dsui_0839at 854.115 kb on - strand, within Dsui_0839at 854.120 kb on - strand, within Dsui_0839at 854.151 kb on - strand, within Dsui_0839at 854.157 kb on - strand, within Dsui_0839at 854.161 kb on + strand, within Dsui_0839at 854.234 kb on + strand, within Dsui_0839at 854.264 kb on + strand, within Dsui_0839at 854.264 kb on + strand, within Dsui_0839at 854.272 kb on - strand, within Dsui_0839at 854.272 kb on - strand, within Dsui_0839at 854.303 kb on + strand, within Dsui_0839at 854.317 kb on - strand, within Dsui_0839at 854.391 kb on + strand, within Dsui_0839at 854.437 kb on - strand, within Dsui_0839at 854.523 kb on + strand, within Dsui_0839at 854.531 kb on - strand, within Dsui_0839at 854.557 kb on + strand, within Dsui_0839at 854.622 kb on + strand, within Dsui_0839at 854.629 kb on + strand, within Dsui_0839at 854.703 kb on + strand, within Dsui_0839at 854.722 kb on - strandat 854.800 kb on + strand, within Dsui_0839at 854.808 kb on - strand, within Dsui_0839at 854.862 kb on - strand, within Dsui_0839at 854.868 kb on - strand, within Dsui_0839at 854.874 kb on + strand, within Dsui_0839at 854.882 kb on - strand, within Dsui_0839at 854.882 kb on - strand, within Dsui_0839at 854.882 kb on - strand, within Dsui_0839at 854.928 kb on + strandat 854.937 kb on + strandat 854.938 kb on - strandat 854.942 kb on + strandat 854.950 kb on - strandat 855.047 kb on - strandat 855.079 kb on + strandat 855.091 kb on + strandat 855.095 kb on + strandat 855.136 kb on - strandat 855.136 kb on - strandat 855.235 kb on - strand, within Dsui_0840at 855.473 kb on - strandat 855.503 kb on + strand, within Dsui_0840at 855.514 kb on + strand, within Dsui_0840at 855.514 kb on + strand, within Dsui_0840at 855.542 kb on - strand, within Dsui_0840at 855.696 kb on - strand, within Dsui_0840at 855.729 kb on + strand, within Dsui_0840at 855.737 kb on - strand, within Dsui_0840at 855.758 kb on + strand, within Dsui_0840at 855.768 kb on + strand, within Dsui_0840at 855.776 kb on - strand, within Dsui_0840at 855.909 kb on + strand, within Dsui_0840at 855.919 kb on + strand, within Dsui_0840at 855.985 kb on - strand, within Dsui_0840

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP
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852,860 + -1.1
852,860 + Dsui_0838 0.26 -1.9
852,929 + Dsui_0838 0.32 -1.1
852,950 + +0.4
853,004 + +0.4
853,058 - -0.6
853,147 + Dsui_0838 0.52 -1.6
853,147 + Dsui_0838 0.52 -2.0
853,188 - Dsui_0838 0.56 -1.1
853,226 - Dsui_0838 0.59 -1.9
853,241 - -0.6
853,243 + Dsui_0838 0.61 -1.1
853,244 + Dsui_0838 0.61 -1.6
853,252 - -0.6
853,253 + Dsui_0838 0.62 -0.6
853,263 + Dsui_0838 0.63 -0.6
853,289 - Dsui_0838 0.65 -1.6
853,296 - +0.4
853,425 + Dsui_0838 0.77 -1.6
853,460 + Dsui_0838 0.81 -0.6
853,485 + Dsui_0838 0.83 -1.6
853,485 + Dsui_0838 0.83 -1.6
853,488 - Dsui_0838 0.83 -0.6
853,535 + Dsui_0838 0.87 -1.1
853,575 - +0.4
853,593 - -0.6
853,798 + -0.2
853,798 + -0.3
853,850 - +0.4
853,924 - +1.4
853,938 + +0.0
853,959 + -0.6
854,013 - -1.1
854,057 + Dsui_0839 0.18 -1.9
854,057 + Dsui_0839 0.18 +0.4
854,103 - +0.4
854,112 + Dsui_0839 0.22 -1.6
854,115 - Dsui_0839 0.23 +0.4
854,120 - Dsui_0839 0.23 -0.6
854,151 - Dsui_0839 0.26 -1.1
854,157 - Dsui_0839 0.26 -2.1
854,161 + Dsui_0839 0.27 +0.4
854,234 + Dsui_0839 0.33 -0.6
854,264 + Dsui_0839 0.36 -0.6
854,264 + Dsui_0839 0.36 -0.6
854,272 - Dsui_0839 0.36 +0.4
854,272 - Dsui_0839 0.36 -2.4
854,303 + Dsui_0839 0.39 -0.6
854,317 - Dsui_0839 0.40 +0.4
854,391 + Dsui_0839 0.47 +0.4
854,437 - Dsui_0839 0.51 +0.4
854,523 + Dsui_0839 0.58 -1.1
854,531 - Dsui_0839 0.59 -2.4
854,557 + Dsui_0839 0.61 +0.4
854,622 + Dsui_0839 0.67 -2.7
854,629 + Dsui_0839 0.67 +0.4
854,703 + Dsui_0839 0.74 -2.4
854,722 - +0.4
854,800 + Dsui_0839 0.82 -1.1
854,808 - Dsui_0839 0.83 +0.4
854,862 - Dsui_0839 0.87 +0.4
854,868 - Dsui_0839 0.88 -1.6
854,874 + Dsui_0839 0.88 -0.6
854,882 - Dsui_0839 0.89 +0.4
854,882 - Dsui_0839 0.89 -2.1
854,882 - Dsui_0839 0.89 -2.6
854,928 + -1.6
854,937 + -1.9
854,938 - -3.0
854,942 + -1.1
854,950 - -0.6
855,047 - -0.6
855,079 + -1.1
855,091 + +0.4
855,095 + +0.4
855,136 - +0.4
855,136 - -1.6
855,235 - Dsui_0840 0.17 +0.4
855,473 - +0.4
855,503 + Dsui_0840 0.40 -1.1
855,514 + Dsui_0840 0.41 -1.6
855,514 + Dsui_0840 0.41 +0.4
855,542 - Dsui_0840 0.43 -0.6
855,696 - Dsui_0840 0.56 -1.6
855,729 + Dsui_0840 0.59 -1.9
855,737 - Dsui_0840 0.60 +0.4
855,758 + Dsui_0840 0.61 -0.6
855,768 + Dsui_0840 0.62 -0.1
855,776 - Dsui_0840 0.63 -2.1
855,909 + Dsui_0840 0.74 +0.4
855,919 + Dsui_0840 0.75 +1.4
855,985 - Dsui_0840 0.81 -1.6

Or see this region's nucleotide sequence