Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0776 and Dsui_0777 are separated by 11 nucleotides Dsui_0777 and Dsui_0778 overlap by 4 nucleotides Dsui_0778 and Dsui_0779 are separated by 249 nucleotides
Dsui_0776: Dsui_0776 - PAS domain S-box, at 777,645 to 781,565
_0776
Dsui_0777: Dsui_0777 - response regulator containing a CheY-like receiver domain and an HD-GYP domain, at 781,577 to 782,740
_0777
Dsui_0778: Dsui_0778 - small protein A (tmRNA-binding), at 782,737 to 783,222
_0778
Dsui_0779: Dsui_0779 - 5-methyltetrahydrofolate--homocysteine methyltransferase, at 783,472 to 787,152
_0779
Position (kb) 781
782
783 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 780.592 kb on + strand, within Dsui_0776 at 780.685 kb on + strand, within Dsui_0776 at 780.685 kb on + strand, within Dsui_0776 at 780.685 kb on + strand at 780.715 kb on + strand at 780.738 kb on - strand, within Dsui_0776 at 780.786 kb on - strand, within Dsui_0776 at 780.857 kb on + strand at 780.872 kb on - strand, within Dsui_0776 at 780.874 kb on + strand, within Dsui_0776 at 780.882 kb on - strand, within Dsui_0776 at 781.002 kb on - strand, within Dsui_0776 at 781.034 kb on + strand, within Dsui_0776 at 781.037 kb on - strand, within Dsui_0776 at 781.200 kb on + strand at 781.213 kb on - strand at 781.239 kb on - strand at 781.365 kb on - strand at 781.418 kb on - strand at 781.469 kb on - strand at 781.498 kb on - strand at 781.498 kb on - strand at 781.502 kb on + strand at 781.516 kb on - strand at 781.544 kb on - strand at 781.544 kb on - strand at 781.559 kb on + strand at 781.574 kb on + strand at 781.680 kb on + strand at 781.680 kb on + strand at 781.743 kb on + strand, within Dsui_0777 at 781.771 kb on + strand, within Dsui_0777 at 781.782 kb on + strand, within Dsui_0777 at 781.782 kb on + strand, within Dsui_0777 at 781.782 kb on + strand, within Dsui_0777 at 781.784 kb on - strand, within Dsui_0777 at 781.790 kb on - strand, within Dsui_0777 at 781.794 kb on + strand, within Dsui_0777 at 781.806 kb on + strand, within Dsui_0777 at 781.881 kb on + strand, within Dsui_0777 at 781.908 kb on + strand, within Dsui_0777 at 782.031 kb on + strand, within Dsui_0777 at 782.082 kb on - strand, within Dsui_0777 at 782.205 kb on - strand at 782.300 kb on - strand, within Dsui_0777 at 782.325 kb on + strand, within Dsui_0777 at 782.347 kb on + strand, within Dsui_0777 at 782.362 kb on - strand, within Dsui_0777 at 782.447 kb on + strand, within Dsui_0777 at 782.447 kb on + strand, within Dsui_0777 at 782.448 kb on + strand, within Dsui_0777 at 782.496 kb on - strand, within Dsui_0777 at 782.575 kb on - strand, within Dsui_0777 at 782.674 kb on + strand at 782.737 kb on + strand at 782.777 kb on - strand at 782.917 kb on - strand at 782.962 kb on - strand, within Dsui_0778 at 782.989 kb on - strand, within Dsui_0778 at 782.989 kb on - strand, within Dsui_0778 at 782.999 kb on - strand, within Dsui_0778 at 783.035 kb on + strand, within Dsui_0778 at 783.055 kb on + strand, within Dsui_0778 at 783.216 kb on + strand at 783.306 kb on + strand at 783.314 kb on - strand at 783.364 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 780,592 + Dsui_0776 0.75 -1.2 780,685 + Dsui_0776 0.78 +0.4 780,685 + Dsui_0776 0.78 -1.6 780,685 + -1.6 780,715 + +0.4 780,738 - Dsui_0776 0.79 +0.4 780,786 - Dsui_0776 0.80 +1.4 780,857 + +0.4 780,872 - Dsui_0776 0.82 -0.6 780,874 + Dsui_0776 0.82 +1.0 780,882 - Dsui_0776 0.83 -0.6 781,002 - Dsui_0776 0.86 -0.6 781,034 + Dsui_0776 0.86 -0.9 781,037 - Dsui_0776 0.87 -2.2 781,200 + -0.3 781,213 - -1.2 781,239 - -1.6 781,365 - -2.4 781,418 - -1.4 781,469 - +1.4 781,498 - +0.4 781,498 - +0.4 781,502 + -1.6 781,516 - -1.9 781,544 - +0.4 781,544 - +0.4 781,559 + -1.0 781,574 + +0.4 781,680 + -1.0 781,680 + +0.0 781,743 + Dsui_0777 0.14 -1.6 781,771 + Dsui_0777 0.17 -1.9 781,782 + Dsui_0777 0.18 -1.6 781,782 + Dsui_0777 0.18 -0.8 781,782 + Dsui_0777 0.18 -1.6 781,784 - Dsui_0777 0.18 -1.6 781,790 - Dsui_0777 0.18 -0.9 781,794 + Dsui_0777 0.19 -0.2 781,806 + Dsui_0777 0.20 +0.2 781,881 + Dsui_0777 0.26 -1.9 781,908 + Dsui_0777 0.28 +1.4 782,031 + Dsui_0777 0.39 +0.4 782,082 - Dsui_0777 0.43 -2.2 782,205 - +0.4 782,300 - Dsui_0777 0.62 -1.6 782,325 + Dsui_0777 0.64 +0.3 782,347 + Dsui_0777 0.66 -0.9 782,362 - Dsui_0777 0.67 -1.2 782,447 + Dsui_0777 0.75 +0.1 782,447 + Dsui_0777 0.75 +1.0 782,448 + Dsui_0777 0.75 +0.4 782,496 - Dsui_0777 0.79 -3.2 782,575 - Dsui_0777 0.86 -0.6 782,674 + +0.4 782,737 + -0.6 782,777 - +0.4 782,917 - +0.4 782,962 - Dsui_0778 0.46 -2.6 782,989 - Dsui_0778 0.52 -1.2 782,989 - Dsui_0778 0.52 -2.2 782,999 - Dsui_0778 0.54 -2.4 783,035 + Dsui_0778 0.61 -2.4 783,055 + Dsui_0778 0.65 -1.4 783,216 + -0.6 783,306 + -0.2 783,314 - -2.2 783,364 + -0.3
Or see this region's nucleotide sequence