Strain Fitness in Dechlorosoma suillum PS around Dsui_0591

Experiment: ALP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0589 and Dsui_0590 are separated by 8 nucleotidesDsui_0590 and Dsui_0591 are separated by 91 nucleotidesDsui_0591 and Dsui_0592 are separated by 155 nucleotides Dsui_0589: Dsui_0589 - putative GTPase, G3E family, at 586,512 to 587,507 _0589 Dsui_0590: Dsui_0590 - Fe2+/Zn2+ uptake regulation protein, at 587,516 to 587,956 _0590 Dsui_0591: Dsui_0591 - deoxyribodipyrimidine photolyase, at 588,048 to 589,496 _0591 Dsui_0592: Dsui_0592 - putative polymerase with PALM domain, HD hydrolase domain and Zn ribbon, at 589,652 to 591,292 _0592 Position (kb) 588 589 590Strain fitness (log2 ratio) -2 -1 0 1at 587.109 kb on - strand, within Dsui_0589at 587.119 kb on - strand, within Dsui_0589at 587.144 kb on - strand, within Dsui_0589at 587.166 kb on + strandat 587.203 kb on + strand, within Dsui_0589at 587.280 kb on - strand, within Dsui_0589at 587.301 kb on - strand, within Dsui_0589at 587.366 kb on - strand, within Dsui_0589at 587.431 kb on - strandat 587.500 kb on - strandat 587.540 kb on - strandat 587.596 kb on + strand, within Dsui_0590at 588.073 kb on + strandat 588.121 kb on + strandat 588.137 kb on - strandat 588.198 kb on + strandat 588.216 kb on - strand, within Dsui_0591at 588.504 kb on - strand, within Dsui_0591at 588.650 kb on - strand, within Dsui_0591at 588.675 kb on - strand, within Dsui_0591at 588.764 kb on + strand, within Dsui_0591at 588.764 kb on + strand, within Dsui_0591at 588.764 kb on + strand, within Dsui_0591at 588.794 kb on - strand, within Dsui_0591at 588.892 kb on + strandat 588.892 kb on + strandat 589.053 kb on + strandat 589.118 kb on + strand, within Dsui_0591at 589.290 kb on + strand, within Dsui_0591at 589.516 kb on - strandat 589.530 kb on - strandat 589.565 kb on + strandat 589.565 kb on + strandat 589.588 kb on + strandat 589.629 kb on + strandat 589.629 kb on + strandat 589.637 kb on - strandat 589.637 kb on - strandat 589.692 kb on + strandat 589.700 kb on - strandat 589.700 kb on - strandat 589.751 kb on - strandat 589.751 kb on - strandat 589.815 kb on + strandat 589.888 kb on + strand, within Dsui_0592at 590.046 kb on + strand, within Dsui_0592at 590.048 kb on - strand, within Dsui_0592at 590.060 kb on - strand, within Dsui_0592at 590.191 kb on - strand, within Dsui_0592at 590.195 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP
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587,109 - Dsui_0589 0.60 +0.2
587,119 - Dsui_0589 0.61 -0.8
587,144 - Dsui_0589 0.63 -0.1
587,166 + +0.3
587,203 + Dsui_0589 0.69 +0.3
587,280 - Dsui_0589 0.77 -0.9
587,301 - Dsui_0589 0.79 -0.2
587,366 - Dsui_0589 0.86 -0.7
587,431 - -2.7
587,500 - -1.5
587,540 - -0.2
587,596 + Dsui_0590 0.18 +0.3
588,073 + -0.7
588,121 + -0.7
588,137 - -0.3
588,198 + +0.3
588,216 - Dsui_0591 0.12 +0.6
588,504 - Dsui_0591 0.31 -0.2
588,650 - Dsui_0591 0.42 -0.3
588,675 - Dsui_0591 0.43 -0.3
588,764 + Dsui_0591 0.49 -1.3
588,764 + Dsui_0591 0.49 -1.3
588,764 + Dsui_0591 0.49 -2.0
588,794 - Dsui_0591 0.51 -0.1
588,892 + +0.3
588,892 + -0.7
589,053 + +0.3
589,118 + Dsui_0591 0.74 -0.7
589,290 + Dsui_0591 0.86 -0.7
589,516 - -0.3
589,530 - -0.3
589,565 + -0.8
589,565 + -0.2
589,588 + -0.3
589,629 + -0.2
589,629 + -1.2
589,637 - +0.3
589,637 - +0.3
589,692 + -0.2
589,700 - -1.3
589,700 - +0.3
589,751 - -0.7
589,751 - -1.3
589,815 + -0.4
589,888 + Dsui_0592 0.14 -0.2
590,046 + Dsui_0592 0.24 -1.8
590,048 - Dsui_0592 0.24 -1.3
590,060 - Dsui_0592 0.25 +0.3
590,191 - Dsui_0592 0.33 -1.7
590,195 - +0.3

Or see this region's nucleotide sequence