Strain Fitness in Dechlorosoma suillum PS around Dsui_0575

Experiment: ALP

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0574 and Dsui_0575 are separated by 12 nucleotidesDsui_0575 and Dsui_0576 are separated by 21 nucleotidesDsui_0576 and Dsui_0577 overlap by 8 nucleotides Dsui_0574: Dsui_0574 - flavin-dependent dehydrogenase, at 571,880 to 573,178 _0574 Dsui_0575: Dsui_0575 - electron transfer flavoprotein, alpha subunit, at 573,191 to 574,273 _0575 Dsui_0576: Dsui_0576 - electron transfer flavoprotein, beta subunit, at 574,295 to 575,140 _0576 Dsui_0577: Dsui_0577 - Nitrogen fixation protein NifW, at 575,133 to 575,465 _0577 Position (kb) 573 574 575Strain fitness (log2 ratio) -3 -2 -1 0 1at 572.192 kb on + strand, within Dsui_0574at 572.303 kb on - strand, within Dsui_0574at 572.303 kb on - strandat 572.321 kb on - strand, within Dsui_0574at 572.339 kb on - strand, within Dsui_0574at 572.430 kb on + strandat 572.505 kb on + strand, within Dsui_0574at 572.638 kb on - strand, within Dsui_0574at 572.645 kb on - strandat 572.793 kb on - strand, within Dsui_0574at 572.821 kb on - strandat 572.838 kb on - strand, within Dsui_0574at 572.887 kb on - strand, within Dsui_0574at 572.977 kb on + strand, within Dsui_0574at 573.091 kb on + strandat 573.099 kb on - strandat 573.121 kb on - strandat 573.231 kb on - strandat 573.255 kb on + strandat 573.332 kb on - strand, within Dsui_0575at 573.334 kb on + strand, within Dsui_0575at 573.484 kb on + strand, within Dsui_0575at 573.716 kb on - strand, within Dsui_0575at 573.737 kb on - strand, within Dsui_0575at 573.864 kb on - strand, within Dsui_0575at 573.904 kb on + strandat 573.964 kb on + strand, within Dsui_0575at 574.022 kb on - strand, within Dsui_0575at 574.065 kb on - strand, within Dsui_0575at 574.077 kb on + strand, within Dsui_0575at 574.095 kb on + strand, within Dsui_0575at 574.155 kb on - strand, within Dsui_0575at 574.202 kb on - strandat 574.273 kb on + strandat 574.283 kb on + strandat 574.301 kb on - strandat 574.341 kb on + strandat 574.344 kb on - strandat 574.349 kb on - strandat 574.360 kb on - strandat 574.362 kb on + strandat 574.461 kb on - strand, within Dsui_0576at 574.519 kb on + strand, within Dsui_0576at 574.591 kb on - strand, within Dsui_0576at 574.592 kb on - strand, within Dsui_0576at 575.106 kb on + strandat 575.116 kb on + strandat 575.124 kb on - strandat 575.135 kb on + strandat 575.150 kb on + strandat 575.150 kb on + strandat 575.195 kb on - strand, within Dsui_0577

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP
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572,192 + Dsui_0574 0.24 +0.3
572,303 - Dsui_0574 0.33 +0.3
572,303 - +0.3
572,321 - Dsui_0574 0.34 +0.3
572,339 - Dsui_0574 0.35 -1.3
572,430 + +0.3
572,505 + Dsui_0574 0.48 -1.3
572,638 - Dsui_0574 0.58 -2.5
572,645 - -0.7
572,793 - Dsui_0574 0.70 -0.7
572,821 - -0.7
572,838 - Dsui_0574 0.74 -3.3
572,887 - Dsui_0574 0.78 +0.3
572,977 + Dsui_0574 0.84 +0.3
573,091 + -0.7
573,099 - -2.5
573,121 - +0.3
573,231 - -1.0
573,255 + -0.7
573,332 - Dsui_0575 0.13 -0.7
573,334 + Dsui_0575 0.13 +0.3
573,484 + Dsui_0575 0.27 -1.3
573,716 - Dsui_0575 0.48 -3.4
573,737 - Dsui_0575 0.50 +0.3
573,864 - Dsui_0575 0.62 -0.7
573,904 + +0.3
573,964 + Dsui_0575 0.71 +0.3
574,022 - Dsui_0575 0.77 -0.2
574,065 - Dsui_0575 0.81 -1.3
574,077 + Dsui_0575 0.82 +0.3
574,095 + Dsui_0575 0.83 +0.3
574,155 - Dsui_0575 0.89 -1.7
574,202 - -0.7
574,273 + -1.3
574,283 + +0.3
574,301 - -1.3
574,341 + +0.3
574,344 - -0.7
574,349 - -1.7
574,360 - -2.0
574,362 + -0.7
574,461 - Dsui_0576 0.20 +0.3
574,519 + Dsui_0576 0.26 -1.7
574,591 - Dsui_0576 0.35 -1.7
574,592 - Dsui_0576 0.35 +0.3
575,106 + -0.1
575,116 + +0.3
575,124 - +0.3
575,135 + -1.3
575,150 + +0.3
575,150 + +0.3
575,195 - Dsui_0577 0.19 -2.8

Or see this region's nucleotide sequence