Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0542 and Dsui_0543 are separated by 228 nucleotides Dsui_0543 and Dsui_0544 are separated by 124 nucleotides Dsui_0544 and Dsui_0545 are separated by 94 nucleotides Dsui_0545 and Dsui_0546 are separated by 81 nucleotides Dsui_0546 and Dsui_0547 are separated by 60 nucleotides
Dsui_0542: Dsui_0542 - cobyric acid synthase CobQ, at 546,212 to 547,705
_0542
Dsui_0543: Dsui_0543 - malic enzyme, at 547,934 to 550,210
_0543
Dsui_0544: Dsui_0544 - flagellar basal body-associated protein, at 550,335 to 550,724
_0544
Dsui_0545: Dsui_0545 - tRNA-Thr, at 550,819 to 550,893
_0545
Dsui_0546: Dsui_0546 - tRNA-Lys, at 550,975 to 551,050
_0546
Dsui_0547: Dsui_0547 - tRNA-Lys, at 551,111 to 551,186
_0547
Position (kb) 547
548
549
550
551 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 546.950 kb on + strand, within Dsui_0542 at 546.970 kb on + strand, within Dsui_0542 at 547.002 kb on + strand at 547.049 kb on + strand, within Dsui_0542 at 547.131 kb on - strand, within Dsui_0542 at 547.262 kb on + strand, within Dsui_0542 at 547.374 kb on - strand, within Dsui_0542 at 547.424 kb on + strand, within Dsui_0542 at 547.432 kb on - strand, within Dsui_0542 at 547.622 kb on + strand at 547.918 kb on + strand at 547.918 kb on + strand at 547.924 kb on + strand at 547.925 kb on + strand at 547.926 kb on - strand at 548.015 kb on + strand at 548.071 kb on - strand at 548.092 kb on + strand at 548.098 kb on - strand at 548.100 kb on - strand at 548.100 kb on - strand at 548.172 kb on - strand, within Dsui_0543 at 548.307 kb on + strand, within Dsui_0543 at 548.482 kb on + strand, within Dsui_0543 at 548.593 kb on + strand, within Dsui_0543 at 548.613 kb on - strand, within Dsui_0543 at 548.613 kb on - strand at 548.688 kb on - strand, within Dsui_0543 at 548.778 kb on + strand, within Dsui_0543 at 548.796 kb on - strand, within Dsui_0543 at 548.871 kb on + strand, within Dsui_0543 at 548.979 kb on - strand at 549.313 kb on + strand, within Dsui_0543 at 549.334 kb on + strand, within Dsui_0543 at 549.355 kb on - strand, within Dsui_0543 at 549.393 kb on + strand, within Dsui_0543 at 549.552 kb on + strand, within Dsui_0543 at 549.810 kb on + strand, within Dsui_0543 at 549.810 kb on + strand, within Dsui_0543 at 549.818 kb on - strand, within Dsui_0543 at 549.901 kb on + strand, within Dsui_0543 at 549.963 kb on - strand, within Dsui_0543 at 550.219 kb on + strand at 550.227 kb on - strand at 550.232 kb on - strand at 550.301 kb on + strand at 550.378 kb on + strand, within Dsui_0544 at 550.385 kb on - strand, within Dsui_0544 at 550.508 kb on + strand, within Dsui_0544 at 550.689 kb on + strand at 550.699 kb on + strand at 550.707 kb on - strand at 550.738 kb on - strand at 550.751 kb on - strand at 550.754 kb on + strand at 550.799 kb on - strand at 550.806 kb on - strand at 550.809 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 546,950 + Dsui_0542 0.49 -2.4 546,970 + Dsui_0542 0.51 -0.9 547,002 + +0.3 547,049 + Dsui_0542 0.56 -1.3 547,131 - Dsui_0542 0.62 -0.7 547,262 + Dsui_0542 0.70 -0.5 547,374 - Dsui_0542 0.78 -2.3 547,424 + Dsui_0542 0.81 -1.8 547,432 - Dsui_0542 0.82 -2.7 547,622 + -1.0 547,918 + -1.0 547,918 + -0.4 547,924 + -0.4 547,925 + -0.9 547,926 - -0.7 548,015 + -1.8 548,071 - -1.7 548,092 + -0.6 548,098 - -2.3 548,100 - -1.3 548,100 - -1.3 548,172 - Dsui_0543 0.10 -0.7 548,307 + Dsui_0543 0.16 -0.6 548,482 + Dsui_0543 0.24 -1.4 548,593 + Dsui_0543 0.29 -1.4 548,613 - Dsui_0543 0.30 -1.7 548,613 - -0.7 548,688 - Dsui_0543 0.33 -2.5 548,778 + Dsui_0543 0.37 -1.4 548,796 - Dsui_0543 0.38 -3.0 548,871 + Dsui_0543 0.41 -0.8 548,979 - -1.3 549,313 + Dsui_0543 0.61 -2.2 549,334 + Dsui_0543 0.61 -1.1 549,355 - Dsui_0543 0.62 -0.4 549,393 + Dsui_0543 0.64 -1.4 549,552 + Dsui_0543 0.71 -1.5 549,810 + Dsui_0543 0.82 -0.5 549,810 + Dsui_0543 0.82 -1.3 549,818 - Dsui_0543 0.83 -1.0 549,901 + Dsui_0543 0.86 -1.0 549,963 - Dsui_0543 0.89 -0.7 550,219 + -0.2 550,227 - -0.5 550,232 - -0.7 550,301 + -3.1 550,378 + Dsui_0544 0.11 -2.3 550,385 - Dsui_0544 0.13 +0.0 550,508 + Dsui_0544 0.44 -0.9 550,689 + -0.5 550,699 + -1.3 550,707 - -0.6 550,738 - -0.2 550,751 - -0.2 550,754 + -1.7 550,799 - +0.2 550,806 - -0.0 550,809 + -0.7
Or see this region's nucleotide sequence