Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0421 and Dsui_0422 are separated by 330 nucleotides Dsui_0422 and Dsui_0423 are separated by 50 nucleotides
Dsui_0421: Dsui_0421 - carbonic anhydrase, at 422,683 to 424,119
_0421
Dsui_0422: Dsui_0422 - thiamine biosynthesis protein ThiC, at 424,450 to 426,366
_0422
Dsui_0423: Dsui_0423 - putative permease, at 426,417 to 427,475
_0423
Position (kb) 424
425
426
427 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 423.463 kb on + strand at 423.625 kb on - strand, within Dsui_0421 at 423.647 kb on + strand, within Dsui_0421 at 423.769 kb on - strand, within Dsui_0421 at 423.857 kb on + strand, within Dsui_0421 at 423.897 kb on - strand, within Dsui_0421 at 423.935 kb on + strand, within Dsui_0421 at 423.985 kb on - strand at 424.115 kb on + strand at 424.115 kb on + strand at 424.123 kb on - strand at 424.140 kb on + strand at 424.140 kb on + strand at 424.151 kb on + strand at 424.151 kb on + strand at 424.159 kb on - strand at 424.159 kb on - strand at 424.159 kb on - strand at 424.181 kb on + strand at 424.192 kb on + strand at 424.242 kb on + strand at 424.242 kb on + strand at 424.250 kb on - strand at 424.369 kb on + strand at 426.433 kb on + strand at 426.496 kb on - strand at 426.566 kb on - strand, within Dsui_0423 at 426.596 kb on + strand, within Dsui_0423 at 426.691 kb on - strand, within Dsui_0423 at 426.700 kb on + strand at 426.737 kb on + strand at 426.750 kb on - strand, within Dsui_0423 at 426.753 kb on + strand, within Dsui_0423 at 426.756 kb on - strand, within Dsui_0423 at 426.845 kb on - strand, within Dsui_0423 at 426.850 kb on - strand, within Dsui_0423 at 426.917 kb on - strand, within Dsui_0423 at 427.006 kb on - strand, within Dsui_0423 at 427.067 kb on - strand, within Dsui_0423 at 427.091 kb on + strand, within Dsui_0423 at 427.184 kb on - strand, within Dsui_0423 at 427.282 kb on - strand, within Dsui_0423
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 423,463 + +0.4 423,625 - Dsui_0421 0.66 -0.6 423,647 + Dsui_0421 0.67 -0.6 423,769 - Dsui_0421 0.76 +0.4 423,857 + Dsui_0421 0.82 -1.2 423,897 - Dsui_0421 0.84 -0.6 423,935 + Dsui_0421 0.87 +0.4 423,985 - -0.6 424,115 + +0.4 424,115 + -1.2 424,123 - -2.0 424,140 + +0.4 424,140 + -1.6 424,151 + +0.4 424,151 + +0.4 424,159 - -0.6 424,159 - -1.2 424,159 - -1.2 424,181 + -1.2 424,192 + -1.2 424,242 + -0.7 424,242 + -0.5 424,250 - +0.4 424,369 + -1.4 426,433 + -1.4 426,496 - -5.2 426,566 - Dsui_0423 0.14 -5.6 426,596 + Dsui_0423 0.17 -1.2 426,691 - Dsui_0423 0.26 -4.0 426,700 + +0.4 426,737 + +0.4 426,750 - Dsui_0423 0.31 -4.9 426,753 + Dsui_0423 0.32 -0.6 426,756 - Dsui_0423 0.32 -6.7 426,845 - Dsui_0423 0.40 -6.7 426,850 - Dsui_0423 0.41 -4.2 426,917 - Dsui_0423 0.47 -5.5 427,006 - Dsui_0423 0.56 -4.3 427,067 - Dsui_0423 0.61 -2.8 427,091 + Dsui_0423 0.64 +1.4 427,184 - Dsui_0423 0.72 -4.3 427,282 - Dsui_0423 0.82 -2.8
Or see this region's nucleotide sequence