Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0394 and Dsui_0395 are separated by 22 nucleotides Dsui_0395 and Dsui_0396 are separated by 124 nucleotides Dsui_0396 and Dsui_0397 overlap by 4 nucleotides
Dsui_0394: Dsui_0394 - sugar kinase, ribokinase, at 392,746 to 393,681
_0394
Dsui_0395: Dsui_0395 - outer membrane lipoprotein, at 393,704 to 394,171
_0395
Dsui_0396: Dsui_0396 - putative hemolysin, at 394,296 to 395,054
_0396
Dsui_0397: Dsui_0397 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 395,051 to 395,878
_0397
Position (kb) 393
394
395 Strain fitness (log2 ratio) -2
-1
0
1 at 392.705 kb on + strand at 392.748 kb on - strand at 392.765 kb on - strand at 392.821 kb on - strand at 392.912 kb on + strand, within Dsui_0394 at 392.922 kb on + strand, within Dsui_0394 at 393.001 kb on - strand at 393.001 kb on - strand at 393.001 kb on - strand at 393.033 kb on + strand, within Dsui_0394 at 393.041 kb on - strand at 393.051 kb on + strand, within Dsui_0394 at 393.054 kb on + strand, within Dsui_0394 at 393.057 kb on - strand at 393.103 kb on + strand, within Dsui_0394 at 393.110 kb on + strand, within Dsui_0394 at 393.128 kb on - strand, within Dsui_0394 at 393.207 kb on - strand, within Dsui_0394 at 393.252 kb on - strand at 393.277 kb on + strand, within Dsui_0394 at 393.299 kb on - strand, within Dsui_0394 at 393.319 kb on - strand, within Dsui_0394 at 393.423 kb on - strand, within Dsui_0394 at 393.498 kb on - strand at 393.514 kb on + strand, within Dsui_0394 at 393.519 kb on + strand, within Dsui_0394 at 393.519 kb on + strand, within Dsui_0394 at 393.683 kb on - strand at 393.795 kb on - strand at 393.976 kb on + strand, within Dsui_0395 at 394.091 kb on - strand, within Dsui_0395 at 394.172 kb on + strand at 394.172 kb on + strand at 394.187 kb on - strand at 394.287 kb on + strand at 394.301 kb on - strand at 394.362 kb on - strand at 394.507 kb on - strand, within Dsui_0396 at 394.529 kb on + strand, within Dsui_0396 at 394.625 kb on - strand, within Dsui_0396 at 394.662 kb on - strand, within Dsui_0396 at 394.687 kb on + strand, within Dsui_0396 at 394.702 kb on + strand, within Dsui_0396 at 394.710 kb on - strand at 394.710 kb on - strand, within Dsui_0396 at 394.754 kb on - strand, within Dsui_0396 at 394.776 kb on - strand, within Dsui_0396 at 394.789 kb on - strand, within Dsui_0396 at 394.800 kb on + strand, within Dsui_0396 at 394.821 kb on + strand, within Dsui_0396 at 394.828 kb on - strand, within Dsui_0396 at 394.831 kb on + strand, within Dsui_0396 at 394.897 kb on - strand, within Dsui_0396 at 395.016 kb on + strand at 395.092 kb on - strand at 395.109 kb on - strand at 395.133 kb on + strand at 395.158 kb on - strand, within Dsui_0397
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 392,705 + -0.9 392,748 - +0.4 392,765 - -0.6 392,821 - -2.0 392,912 + Dsui_0394 0.18 -0.6 392,922 + Dsui_0394 0.19 -0.5 393,001 - +0.4 393,001 - +0.4 393,001 - +0.4 393,033 + Dsui_0394 0.31 -0.5 393,041 - -0.6 393,051 + Dsui_0394 0.33 -0.2 393,054 + Dsui_0394 0.33 -0.6 393,057 - +0.4 393,103 + Dsui_0394 0.38 -0.3 393,110 + Dsui_0394 0.39 -1.4 393,128 - Dsui_0394 0.41 -1.6 393,207 - Dsui_0394 0.49 -1.2 393,252 - +0.4 393,277 + Dsui_0394 0.57 -0.6 393,299 - Dsui_0394 0.59 -1.2 393,319 - Dsui_0394 0.61 +0.4 393,423 - Dsui_0394 0.72 +0.4 393,498 - -0.6 393,514 + Dsui_0394 0.82 -0.4 393,519 + Dsui_0394 0.83 -0.2 393,519 + Dsui_0394 0.83 -0.9 393,683 - -2.2 393,795 - +0.4 393,976 + Dsui_0395 0.58 -0.5 394,091 - Dsui_0395 0.83 +0.4 394,172 + -0.2 394,172 + -0.1 394,187 - +0.4 394,287 + -0.7 394,301 - -1.2 394,362 - -0.6 394,507 - Dsui_0396 0.28 -0.6 394,529 + Dsui_0396 0.31 +0.4 394,625 - Dsui_0396 0.43 -0.6 394,662 - Dsui_0396 0.48 -2.4 394,687 + Dsui_0396 0.52 +0.4 394,702 + Dsui_0396 0.53 -1.2 394,710 - +0.4 394,710 - Dsui_0396 0.55 -0.6 394,754 - Dsui_0396 0.60 -1.2 394,776 - Dsui_0396 0.63 -1.6 394,789 - Dsui_0396 0.65 -0.6 394,800 + Dsui_0396 0.66 -0.1 394,821 + Dsui_0396 0.69 -0.1 394,828 - Dsui_0396 0.70 +0.4 394,831 + Dsui_0396 0.70 -0.4 394,897 - Dsui_0396 0.79 +0.4 395,016 + -1.9 395,092 - +0.4 395,109 - +0.4 395,133 + -0.2 395,158 - Dsui_0397 0.13 -0.2
Or see this region's nucleotide sequence