Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0381 and Dsui_0382 are separated by 1 nucleotides Dsui_0382 and Dsui_0383 are separated by 123 nucleotides Dsui_0383 and Dsui_0384 are separated by 99 nucleotides
Dsui_0381: Dsui_0381 - signal transduction histidine kinase, at 380,673 to 382,576
_0381
Dsui_0382: Dsui_0382 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 382,578 to 383,228
_0382
Dsui_0383: Dsui_0383 - hypothetical protein, at 383,352 to 383,864
_0383
Dsui_0384: Dsui_0384 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase, at 383,964 to 385,313
_0384
Position (kb) 382
383
384 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 381.634 kb on + strand, within Dsui_0381 at 381.649 kb on + strand, within Dsui_0381 at 381.657 kb on - strand, within Dsui_0381 at 381.671 kb on + strand, within Dsui_0381 at 381.679 kb on - strand, within Dsui_0381 at 381.679 kb on - strand, within Dsui_0381 at 381.693 kb on - strand, within Dsui_0381 at 381.871 kb on - strand at 381.881 kb on + strand at 381.881 kb on + strand, within Dsui_0381 at 381.946 kb on + strand at 381.972 kb on + strand, within Dsui_0381 at 382.031 kb on + strand, within Dsui_0381 at 382.036 kb on + strand, within Dsui_0381 at 382.039 kb on - strand, within Dsui_0381 at 382.078 kb on + strand, within Dsui_0381 at 382.156 kb on - strand, within Dsui_0381 at 382.417 kb on - strand at 382.485 kb on + strand at 382.493 kb on - strand at 382.584 kb on - strand at 382.607 kb on - strand at 382.613 kb on + strand at 382.642 kb on - strand at 382.720 kb on - strand, within Dsui_0382 at 382.725 kb on - strand, within Dsui_0382 at 382.745 kb on + strand, within Dsui_0382 at 382.906 kb on + strand, within Dsui_0382 at 382.914 kb on - strand, within Dsui_0382 at 382.958 kb on + strand, within Dsui_0382 at 382.965 kb on + strand, within Dsui_0382 at 383.032 kb on - strand, within Dsui_0382 at 383.032 kb on - strand, within Dsui_0382 at 383.139 kb on - strand, within Dsui_0382 at 383.175 kb on + strand at 383.175 kb on + strand at 383.183 kb on - strand at 383.183 kb on - strand at 383.238 kb on - strand at 383.271 kb on - strand at 383.281 kb on - strand at 383.321 kb on - strand at 383.350 kb on + strand at 383.354 kb on - strand at 383.358 kb on - strand at 383.413 kb on - strand at 383.432 kb on - strand, within Dsui_0383 at 383.440 kb on + strand, within Dsui_0383 at 383.528 kb on + strand, within Dsui_0383 at 383.543 kb on + strand, within Dsui_0383 at 383.573 kb on - strand, within Dsui_0383 at 383.632 kb on + strand, within Dsui_0383 at 383.640 kb on - strand, within Dsui_0383 at 383.734 kb on - strand, within Dsui_0383 at 383.762 kb on + strand, within Dsui_0383 at 383.770 kb on - strand, within Dsui_0383 at 383.783 kb on + strand, within Dsui_0383 at 383.789 kb on + strand, within Dsui_0383 at 383.789 kb on + strand, within Dsui_0383 at 383.828 kb on + strand at 383.833 kb on + strand at 383.905 kb on - strand at 383.977 kb on + strand at 384.149 kb on - strand, within Dsui_0384 at 384.165 kb on - strand, within Dsui_0384
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 381,634 + Dsui_0381 0.50 -1.2 381,649 + Dsui_0381 0.51 -0.4 381,657 - Dsui_0381 0.52 +0.4 381,671 + Dsui_0381 0.52 -0.5 381,679 - Dsui_0381 0.53 -0.6 381,679 - Dsui_0381 0.53 -1.4 381,693 - Dsui_0381 0.54 -1.9 381,871 - -0.6 381,881 + -0.6 381,881 + Dsui_0381 0.63 +1.2 381,946 + -1.2 381,972 + Dsui_0381 0.68 -0.9 382,031 + Dsui_0381 0.71 -0.2 382,036 + Dsui_0381 0.72 +1.0 382,039 - Dsui_0381 0.72 +0.4 382,078 + Dsui_0381 0.74 -0.9 382,156 - Dsui_0381 0.78 -3.8 382,417 - +0.4 382,485 + -0.6 382,493 - +0.4 382,584 - -0.1 382,607 - -0.1 382,613 + -2.2 382,642 - -0.6 382,720 - Dsui_0382 0.22 -1.1 382,725 - Dsui_0382 0.23 -0.9 382,745 + Dsui_0382 0.26 -0.6 382,906 + Dsui_0382 0.50 -1.2 382,914 - Dsui_0382 0.52 -0.5 382,958 + Dsui_0382 0.58 -1.2 382,965 + Dsui_0382 0.59 +0.4 383,032 - Dsui_0382 0.70 -1.2 383,032 - Dsui_0382 0.70 -0.6 383,139 - Dsui_0382 0.86 -0.5 383,175 + +0.4 383,175 + -2.4 383,183 - +0.5 383,183 - -0.1 383,238 - -0.5 383,271 - +0.4 383,281 - -0.6 383,321 - -0.6 383,350 + -0.4 383,354 - +0.4 383,358 - -2.4 383,413 - -0.6 383,432 - Dsui_0383 0.16 +0.4 383,440 + Dsui_0383 0.17 -2.2 383,528 + Dsui_0383 0.34 -1.0 383,543 + Dsui_0383 0.37 -0.1 383,573 - Dsui_0383 0.43 -0.6 383,632 + Dsui_0383 0.55 -0.3 383,640 - Dsui_0383 0.56 -0.6 383,734 - Dsui_0383 0.74 -0.3 383,762 + Dsui_0383 0.80 -0.6 383,770 - Dsui_0383 0.81 -2.4 383,783 + Dsui_0383 0.84 -0.1 383,789 + Dsui_0383 0.85 -0.4 383,789 + Dsui_0383 0.85 -0.4 383,828 + -0.2 383,833 + +0.4 383,905 - -0.3 383,977 + -0.6 384,149 - Dsui_0384 0.14 -0.9 384,165 - Dsui_0384 0.15 -0.3
Or see this region's nucleotide sequence