Experiment: ALP
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0173 and Dsui_0174 overlap by 4 nucleotides Dsui_0174 and Dsui_0175 overlap by 1 nucleotides
Dsui_0173: Dsui_0173 - site-specific DNA methylase, at 175,738 to 177,546
_0173
Dsui_0174: Dsui_0174 - hypothetical protein, at 177,543 to 178,073
_0174
Dsui_0175: Dsui_0175 - hypothetical protein, at 178,073 to 179,881
_0175
Position (kb) 177
178
179 Strain fitness (log2 ratio) -2
-1
0
1 at 176.628 kb on - strand, within Dsui_0173 at 176.629 kb on + strand at 176.728 kb on - strand, within Dsui_0173 at 176.849 kb on + strand, within Dsui_0173 at 176.870 kb on - strand at 176.904 kb on + strand at 176.944 kb on - strand at 177.139 kb on + strand at 177.195 kb on + strand at 177.200 kb on + strand at 177.336 kb on + strand, within Dsui_0173 at 177.443 kb on + strand at 177.534 kb on - strand at 177.649 kb on - strand at 177.705 kb on + strand at 177.766 kb on + strand, within Dsui_0174 at 177.774 kb on - strand, within Dsui_0174 at 177.787 kb on + strand, within Dsui_0174 at 177.945 kb on + strand, within Dsui_0174 at 177.995 kb on - strand at 178.228 kb on + strand at 178.265 kb on + strand, within Dsui_0175 at 178.349 kb on + strand, within Dsui_0175 at 178.354 kb on + strand, within Dsui_0175 at 178.371 kb on - strand, within Dsui_0175 at 178.847 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP remove 176,628 - Dsui_0173 0.49 -1.6 176,629 + -1.2 176,728 - Dsui_0173 0.55 -1.2 176,849 + Dsui_0173 0.61 -0.6 176,870 - +0.4 176,904 + -0.6 176,944 - +0.4 177,139 + +0.4 177,195 + +0.4 177,200 + +0.4 177,336 + Dsui_0173 0.88 -1.2 177,443 + +0.4 177,534 - +0.4 177,649 - +0.4 177,705 + -1.2 177,766 + Dsui_0174 0.42 -1.2 177,774 - Dsui_0174 0.44 -1.9 177,787 + Dsui_0174 0.46 -1.6 177,945 + Dsui_0174 0.76 -1.2 177,995 - +0.4 178,228 + -2.2 178,265 + Dsui_0175 0.11 -1.2 178,349 + Dsui_0175 0.15 -2.2 178,354 + Dsui_0175 0.16 -1.2 178,371 - Dsui_0175 0.16 +0.4 178,847 - +0.4
Or see this region's nucleotide sequence