Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26365

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26355 and BWI76_RS26360 are separated by 31 nucleotidesBWI76_RS26360 and BWI76_RS26365 are separated by 248 nucleotidesBWI76_RS26365 and BWI76_RS26370 are separated by 241 nucleotides BWI76_RS26355: BWI76_RS26355 - hypothetical protein, at 5,455,620 to 5,455,855 _RS26355 BWI76_RS26360: BWI76_RS26360 - aspartate 1-decarboxylase autocleavage activator PanM, at 5,455,887 to 5,456,273 _RS26360 BWI76_RS26365: BWI76_RS26365 - branched chain amino acid ABC transporter substrate-binding protein, at 5,456,522 to 5,457,640 _RS26365 BWI76_RS26370: BWI76_RS26370 - aromatic amino acid transporter, at 5,457,882 to 5,459,126 _RS26370 Position (kb) 5456 5457 5458Strain fitness (log2 ratio) -1 0 1at 5455.552 kb on + strandat 5455.770 kb on + strand, within BWI76_RS26355at 5455.770 kb on + strand, within BWI76_RS26355at 5455.775 kb on + strand, within BWI76_RS26355at 5455.778 kb on - strand, within BWI76_RS26355at 5455.783 kb on - strand, within BWI76_RS26355at 5455.924 kb on - strandat 5455.924 kb on - strandat 5456.600 kb on - strandat 5456.689 kb on - strand, within BWI76_RS26365at 5456.710 kb on + strand, within BWI76_RS26365at 5456.850 kb on + strand, within BWI76_RS26365at 5456.858 kb on - strand, within BWI76_RS26365at 5457.085 kb on - strand, within BWI76_RS26365at 5457.092 kb on + strand, within BWI76_RS26365at 5457.105 kb on + strand, within BWI76_RS26365at 5457.262 kb on + strand, within BWI76_RS26365at 5457.301 kb on - strand, within BWI76_RS26365at 5457.599 kb on + strandat 5457.609 kb on - strandat 5457.808 kb on + strandat 5457.818 kb on - strandat 5457.818 kb on - strandat 5457.866 kb on + strandat 5457.911 kb on - strandat 5457.929 kb on - strandat 5458.108 kb on + strand, within BWI76_RS26370at 5458.110 kb on + strand, within BWI76_RS26370at 5458.110 kb on + strand, within BWI76_RS26370at 5458.165 kb on + strand, within BWI76_RS26370at 5458.174 kb on - strand, within BWI76_RS26370at 5458.192 kb on + strand, within BWI76_RS26370at 5458.210 kb on - strand, within BWI76_RS26370at 5458.252 kb on - strandat 5458.369 kb on - strand, within BWI76_RS26370at 5458.415 kb on - strand, within BWI76_RS26370at 5458.416 kb on - strand, within BWI76_RS26370at 5458.602 kb on - strand, within BWI76_RS26370at 5458.614 kb on + strand, within BWI76_RS26370at 5458.614 kb on + strand, within BWI76_RS26370at 5458.622 kb on - strand, within BWI76_RS26370

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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5,455,552 + +0.8
5,455,770 + BWI76_RS26355 0.64 -0.5
5,455,770 + BWI76_RS26355 0.64 +0.7
5,455,775 + BWI76_RS26355 0.66 -0.2
5,455,778 - BWI76_RS26355 0.67 -0.1
5,455,783 - BWI76_RS26355 0.69 +0.2
5,455,924 - +0.2
5,455,924 - +0.2
5,456,600 - +0.3
5,456,689 - BWI76_RS26365 0.15 -0.0
5,456,710 + BWI76_RS26365 0.17 +0.6
5,456,850 + BWI76_RS26365 0.29 +0.4
5,456,858 - BWI76_RS26365 0.30 +0.4
5,457,085 - BWI76_RS26365 0.50 +1.4
5,457,092 + BWI76_RS26365 0.51 -0.1
5,457,105 + BWI76_RS26365 0.52 +1.5
5,457,262 + BWI76_RS26365 0.66 +1.5
5,457,301 - BWI76_RS26365 0.70 +0.3
5,457,599 + +0.7
5,457,609 - +0.2
5,457,808 + -0.5
5,457,818 - -0.6
5,457,818 - +0.2
5,457,866 + -1.0
5,457,911 - +0.2
5,457,929 - +0.3
5,458,108 + BWI76_RS26370 0.18 -0.3
5,458,110 + BWI76_RS26370 0.18 -0.7
5,458,110 + BWI76_RS26370 0.18 -0.3
5,458,165 + BWI76_RS26370 0.23 +0.4
5,458,174 - BWI76_RS26370 0.23 -0.9
5,458,192 + BWI76_RS26370 0.25 -0.9
5,458,210 - BWI76_RS26370 0.26 -1.3
5,458,252 - +0.5
5,458,369 - BWI76_RS26370 0.39 +0.1
5,458,415 - BWI76_RS26370 0.43 +0.9
5,458,416 - BWI76_RS26370 0.43 +0.1
5,458,602 - BWI76_RS26370 0.58 +0.8
5,458,614 + BWI76_RS26370 0.59 +0.3
5,458,614 + BWI76_RS26370 0.59 -1.0
5,458,622 - BWI76_RS26370 0.59 +0.1

Or see this region's nucleotide sequence