Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17055

Experiment: D-Serine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17050 and BWI76_RS17055 are separated by 203 nucleotidesBWI76_RS17055 and BWI76_RS17065 are separated by 400 nucleotides BWI76_RS17050: BWI76_RS17050 - FAD-binding oxidoreductase, at 3,535,278 to 3,538,334 _RS17050 BWI76_RS17055: BWI76_RS17055 - hypothetical protein, at 3,538,538 to 3,539,659 _RS17055 BWI76_RS17065: BWI76_RS17065 - phosphoenolpyruvate synthase, at 3,540,060 to 3,542,438 _RS17065 Position (kb) 3538 3539 3540Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3537.675 kb on - strand, within BWI76_RS17050at 3537.685 kb on + strand, within BWI76_RS17050at 3537.858 kb on - strand, within BWI76_RS17050at 3537.880 kb on + strand, within BWI76_RS17050at 3538.096 kb on - strandat 3538.096 kb on - strandat 3538.214 kb on + strandat 3538.214 kb on + strandat 3538.372 kb on + strandat 3538.487 kb on + strandat 3538.524 kb on + strandat 3538.574 kb on + strandat 3538.643 kb on - strandat 3538.665 kb on - strand, within BWI76_RS17055at 3538.813 kb on - strand, within BWI76_RS17055at 3538.896 kb on + strand, within BWI76_RS17055at 3538.903 kb on + strand, within BWI76_RS17055at 3538.903 kb on + strand, within BWI76_RS17055at 3538.911 kb on - strand, within BWI76_RS17055at 3539.053 kb on + strand, within BWI76_RS17055at 3539.214 kb on - strand, within BWI76_RS17055at 3539.214 kb on - strand, within BWI76_RS17055at 3539.232 kb on + strand, within BWI76_RS17055at 3539.240 kb on - strand, within BWI76_RS17055at 3539.325 kb on - strand, within BWI76_RS17055at 3539.439 kb on - strand, within BWI76_RS17055at 3539.555 kb on - strandat 3539.569 kb on + strandat 3539.706 kb on - strandat 3539.940 kb on + strandat 3539.940 kb on + strandat 3540.597 kb on - strand, within BWI76_RS17065

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Serine (C)
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3,537,675 - BWI76_RS17050 0.78 -0.1
3,537,685 + BWI76_RS17050 0.79 -0.4
3,537,858 - BWI76_RS17050 0.84 -0.4
3,537,880 + BWI76_RS17050 0.85 +0.3
3,538,096 - -0.0
3,538,096 - +0.3
3,538,214 + +0.2
3,538,214 + +0.1
3,538,372 + -0.3
3,538,487 + -0.3
3,538,524 + +0.5
3,538,574 + +0.4
3,538,643 - -0.2
3,538,665 - BWI76_RS17055 0.11 +0.5
3,538,813 - BWI76_RS17055 0.25 +0.1
3,538,896 + BWI76_RS17055 0.32 +0.2
3,538,903 + BWI76_RS17055 0.33 +0.4
3,538,903 + BWI76_RS17055 0.33 +0.1
3,538,911 - BWI76_RS17055 0.33 -0.3
3,539,053 + BWI76_RS17055 0.46 +0.1
3,539,214 - BWI76_RS17055 0.60 -0.4
3,539,214 - BWI76_RS17055 0.60 +0.3
3,539,232 + BWI76_RS17055 0.62 +0.8
3,539,240 - BWI76_RS17055 0.63 +0.5
3,539,325 - BWI76_RS17055 0.70 -0.2
3,539,439 - BWI76_RS17055 0.80 +0.0
3,539,555 - -0.9
3,539,569 + -1.7
3,539,706 - -0.1
3,539,940 + -0.7
3,539,940 + -0.8
3,540,597 - BWI76_RS17065 0.23 -4.0

Or see this region's nucleotide sequence