Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19840

Experiment: D-Mannose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_19835 and AO353_19840 are separated by 304 nucleotidesAO353_19840 and AO353_19845 are separated by 39 nucleotides AO353_19835: AO353_19835 - universal stress protein, at 4,359,970 to 4,360,896 _19835 AO353_19840: AO353_19840 - hypothetical protein, at 4,361,201 to 4,361,443 _19840 AO353_19845: AO353_19845 - hypothetical protein, at 4,361,483 to 4,362,721 _19845 Position (kb) 4361 4362Strain fitness (log2 ratio) -2 -1 0 1 2at 4360.307 kb on + strand, within AO353_19835at 4360.307 kb on + strand, within AO353_19835at 4360.307 kb on + strand, within AO353_19835at 4360.307 kb on + strand, within AO353_19835at 4360.307 kb on + strand, within AO353_19835at 4360.307 kb on + strand, within AO353_19835at 4360.307 kb on + strand, within AO353_19835at 4360.308 kb on - strand, within AO353_19835at 4360.308 kb on - strand, within AO353_19835at 4360.308 kb on - strand, within AO353_19835at 4360.308 kb on - strand, within AO353_19835at 4360.313 kb on + strand, within AO353_19835at 4360.313 kb on + strand, within AO353_19835at 4360.313 kb on + strand, within AO353_19835at 4360.313 kb on + strand, within AO353_19835at 4360.313 kb on + strand, within AO353_19835at 4360.313 kb on + strand, within AO353_19835at 4360.313 kb on + strandat 4360.314 kb on - strand, within AO353_19835at 4360.314 kb on - strand, within AO353_19835at 4360.314 kb on - strand, within AO353_19835at 4360.314 kb on - strand, within AO353_19835at 4360.314 kb on - strand, within AO353_19835at 4360.314 kb on - strand, within AO353_19835at 4360.314 kb on - strand, within AO353_19835at 4360.391 kb on + strand, within AO353_19835at 4360.391 kb on + strand, within AO353_19835at 4360.391 kb on + strand, within AO353_19835at 4360.392 kb on - strand, within AO353_19835at 4360.392 kb on - strand, within AO353_19835at 4360.392 kb on - strand, within AO353_19835at 4360.399 kb on - strand, within AO353_19835at 4360.458 kb on + strand, within AO353_19835at 4360.705 kb on - strand, within AO353_19835at 4360.706 kb on + strand, within AO353_19835at 4360.706 kb on + strand, within AO353_19835at 4360.706 kb on + strand, within AO353_19835at 4360.707 kb on - strand, within AO353_19835at 4360.707 kb on - strand, within AO353_19835at 4360.707 kb on - strand, within AO353_19835at 4360.935 kb on + strandat 4360.935 kb on + strandat 4360.935 kb on + strandat 4361.051 kb on + strandat 4361.051 kb on + strandat 4361.051 kb on + strandat 4361.051 kb on + strandat 4361.051 kb on + strandat 4361.051 kb on + strandat 4361.051 kb on + strandat 4361.051 kb on + strandat 4361.052 kb on - strandat 4361.052 kb on - strandat 4361.052 kb on - strandat 4361.052 kb on - strandat 4361.052 kb on - strandat 4361.052 kb on - strandat 4361.052 kb on - strandat 4361.084 kb on + strandat 4361.085 kb on - strandat 4361.201 kb on - strandat 4361.206 kb on + strandat 4361.214 kb on + strandat 4361.247 kb on + strand, within AO353_19840at 4361.247 kb on + strand, within AO353_19840at 4361.248 kb on - strand, within AO353_19840at 4361.248 kb on - strand, within AO353_19840at 4361.248 kb on - strand, within AO353_19840at 4361.477 kb on + strandat 4361.622 kb on + strand, within AO353_19845at 4361.630 kb on + strand, within AO353_19845at 4361.630 kb on + strand, within AO353_19845at 4361.630 kb on + strand, within AO353_19845at 4361.630 kb on + strand, within AO353_19845at 4361.630 kb on + strand, within AO353_19845at 4361.630 kb on + strand, within AO353_19845at 4361.630 kb on + strand, within AO353_19845at 4361.630 kb on + strand, within AO353_19845at 4361.630 kb on + strand, within AO353_19845at 4361.631 kb on - strand, within AO353_19845at 4361.631 kb on - strand, within AO353_19845at 4361.631 kb on - strand, within AO353_19845at 4361.631 kb on - strand, within AO353_19845at 4361.631 kb on - strand, within AO353_19845at 4361.631 kb on - strand, within AO353_19845at 4361.631 kb on - strand, within AO353_19845at 4361.631 kb on - strand, within AO353_19845at 4361.632 kb on + strand, within AO353_19845at 4361.632 kb on + strand, within AO353_19845at 4361.632 kb on + strand, within AO353_19845at 4361.632 kb on + strand, within AO353_19845at 4361.632 kb on + strand, within AO353_19845at 4361.632 kb on + strand, within AO353_19845at 4361.632 kb on + strand, within AO353_19845at 4361.632 kb on + strand, within AO353_19845at 4361.633 kb on - strand, within AO353_19845at 4361.633 kb on - strand, within AO353_19845at 4361.633 kb on - strand, within AO353_19845at 4361.633 kb on - strand, within AO353_19845at 4361.633 kb on - strand, within AO353_19845at 4361.709 kb on - strand, within AO353_19845at 4361.740 kb on + strand, within AO353_19845at 4361.741 kb on - strand, within AO353_19845at 4361.772 kb on + strand, within AO353_19845at 4361.772 kb on + strand, within AO353_19845at 4361.846 kb on + strand, within AO353_19845at 4361.846 kb on + strand, within AO353_19845at 4361.847 kb on - strand, within AO353_19845at 4361.847 kb on - strand, within AO353_19845at 4361.973 kb on - strand, within AO353_19845at 4361.973 kb on - strand, within AO353_19845at 4362.001 kb on + strand, within AO353_19845at 4362.001 kb on + strand, within AO353_19845at 4362.001 kb on + strand, within AO353_19845at 4362.001 kb on + strand, within AO353_19845at 4362.001 kb on + strand, within AO353_19845at 4362.001 kb on + strand, within AO353_19845at 4362.001 kb on + strand, within AO353_19845at 4362.001 kb on + strand, within AO353_19845at 4362.002 kb on - strand, within AO353_19845at 4362.002 kb on - strand, within AO353_19845at 4362.013 kb on - strand, within AO353_19845at 4362.013 kb on - strand, within AO353_19845at 4362.043 kb on + strand, within AO353_19845at 4362.072 kb on - strand, within AO353_19845at 4362.142 kb on + strand, within AO353_19845at 4362.143 kb on - strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strandat 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.308 kb on + strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.309 kb on - strand, within AO353_19845at 4362.405 kb on + strand, within AO353_19845at 4362.405 kb on + strand, within AO353_19845at 4362.406 kb on - strand, within AO353_19845at 4362.424 kb on + strand, within AO353_19845at 4362.424 kb on + strand, within AO353_19845at 4362.424 kb on + strand, within AO353_19845at 4362.424 kb on + strand, within AO353_19845at 4362.425 kb on - strand, within AO353_19845

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
remove
4,360,307 + AO353_19835 0.36 +0.0
4,360,307 + AO353_19835 0.36 +0.4
4,360,307 + AO353_19835 0.36 -0.3
4,360,307 + AO353_19835 0.36 +0.0
4,360,307 + AO353_19835 0.36 +0.1
4,360,307 + AO353_19835 0.36 +0.4
4,360,307 + AO353_19835 0.36 +0.1
4,360,308 - AO353_19835 0.36 +0.4
4,360,308 - AO353_19835 0.36 +0.9
4,360,308 - AO353_19835 0.36 -0.1
4,360,308 - AO353_19835 0.36 -0.3
4,360,313 + AO353_19835 0.37 +0.6
4,360,313 + AO353_19835 0.37 +0.2
4,360,313 + AO353_19835 0.37 -0.5
4,360,313 + AO353_19835 0.37 +0.3
4,360,313 + AO353_19835 0.37 -0.7
4,360,313 + AO353_19835 0.37 -1.0
4,360,313 + +1.7
4,360,314 - AO353_19835 0.37 +0.4
4,360,314 - AO353_19835 0.37 -0.6
4,360,314 - AO353_19835 0.37 +0.1
4,360,314 - AO353_19835 0.37 -0.2
4,360,314 - AO353_19835 0.37 +0.4
4,360,314 - AO353_19835 0.37 -0.2
4,360,314 - AO353_19835 0.37 -0.7
4,360,391 + AO353_19835 0.45 +0.8
4,360,391 + AO353_19835 0.45 -0.6
4,360,391 + AO353_19835 0.45 -0.3
4,360,392 - AO353_19835 0.46 +0.1
4,360,392 - AO353_19835 0.46 -0.1
4,360,392 - AO353_19835 0.46 +0.6
4,360,399 - AO353_19835 0.46 +1.7
4,360,458 + AO353_19835 0.53 +0.2
4,360,705 - AO353_19835 0.79 +1.6
4,360,706 + AO353_19835 0.79 +0.9
4,360,706 + AO353_19835 0.79 +0.5
4,360,706 + AO353_19835 0.79 -0.1
4,360,707 - AO353_19835 0.80 -0.6
4,360,707 - AO353_19835 0.80 -2.1
4,360,707 - AO353_19835 0.80 -0.4
4,360,935 + +0.3
4,360,935 + -0.2
4,360,935 + -0.5
4,361,051 + +0.5
4,361,051 + +0.0
4,361,051 + +1.2
4,361,051 + -1.1
4,361,051 + -0.1
4,361,051 + +1.4
4,361,051 + -1.1
4,361,051 + +0.2
4,361,052 - +0.0
4,361,052 - +0.9
4,361,052 - -0.6
4,361,052 - -1.4
4,361,052 - +1.9
4,361,052 - +0.1
4,361,052 - -0.6
4,361,084 + +0.2
4,361,085 - +0.0
4,361,201 - -0.4
4,361,206 + -0.4
4,361,214 + +1.1
4,361,247 + AO353_19840 0.19 +0.8
4,361,247 + AO353_19840 0.19 -0.0
4,361,248 - AO353_19840 0.19 +1.1
4,361,248 - AO353_19840 0.19 +0.1
4,361,248 - AO353_19840 0.19 -0.5
4,361,477 + +0.3
4,361,622 + AO353_19845 0.11 -0.7
4,361,630 + AO353_19845 0.12 -0.5
4,361,630 + AO353_19845 0.12 +0.3
4,361,630 + AO353_19845 0.12 +0.1
4,361,630 + AO353_19845 0.12 +1.4
4,361,630 + AO353_19845 0.12 +1.2
4,361,630 + AO353_19845 0.12 -1.9
4,361,630 + AO353_19845 0.12 -0.2
4,361,630 + AO353_19845 0.12 -0.4
4,361,630 + AO353_19845 0.12 +0.2
4,361,631 - AO353_19845 0.12 -0.7
4,361,631 - AO353_19845 0.12 -0.8
4,361,631 - AO353_19845 0.12 -1.1
4,361,631 - AO353_19845 0.12 +0.5
4,361,631 - AO353_19845 0.12 -1.9
4,361,631 - AO353_19845 0.12 +0.2
4,361,631 - AO353_19845 0.12 +0.5
4,361,631 - AO353_19845 0.12 +0.0
4,361,632 + AO353_19845 0.12 -1.2
4,361,632 + AO353_19845 0.12 -1.2
4,361,632 + AO353_19845 0.12 -0.9
4,361,632 + AO353_19845 0.12 +1.3
4,361,632 + AO353_19845 0.12 -0.6
4,361,632 + AO353_19845 0.12 +0.4
4,361,632 + AO353_19845 0.12 +1.6
4,361,632 + AO353_19845 0.12 +1.0
4,361,633 - AO353_19845 0.12 -0.4
4,361,633 - AO353_19845 0.12 +0.3
4,361,633 - AO353_19845 0.12 -0.6
4,361,633 - AO353_19845 0.12 -0.3
4,361,633 - AO353_19845 0.12 -0.5
4,361,709 - AO353_19845 0.18 -0.0
4,361,740 + AO353_19845 0.21 +0.0
4,361,741 - AO353_19845 0.21 +0.3
4,361,772 + AO353_19845 0.23 -0.4
4,361,772 + AO353_19845 0.23 -0.7
4,361,846 + AO353_19845 0.29 +0.1
4,361,846 + AO353_19845 0.29 -0.6
4,361,847 - AO353_19845 0.29 +1.3
4,361,847 - AO353_19845 0.29 +1.7
4,361,973 - AO353_19845 0.40 -0.1
4,361,973 - AO353_19845 0.40 -1.8
4,362,001 + AO353_19845 0.42 -1.9
4,362,001 + AO353_19845 0.42 +0.6
4,362,001 + AO353_19845 0.42 +0.0
4,362,001 + AO353_19845 0.42 +0.1
4,362,001 + AO353_19845 0.42 +0.4
4,362,001 + AO353_19845 0.42 +0.5
4,362,001 + AO353_19845 0.42 +0.2
4,362,001 + AO353_19845 0.42 +0.5
4,362,002 - AO353_19845 0.42 -0.3
4,362,002 - AO353_19845 0.42 -0.1
4,362,013 - AO353_19845 0.43 -0.3
4,362,013 - AO353_19845 0.43 +1.3
4,362,043 + AO353_19845 0.45 -0.5
4,362,072 - AO353_19845 0.48 +0.7
4,362,142 + AO353_19845 0.53 -0.6
4,362,143 - AO353_19845 0.53 -0.7
4,362,308 + AO353_19845 0.67 -0.0
4,362,308 + AO353_19845 0.67 +0.5
4,362,308 + AO353_19845 0.67 +0.1
4,362,308 + AO353_19845 0.67 +0.0
4,362,308 + AO353_19845 0.67 +1.3
4,362,308 + AO353_19845 0.67 +0.5
4,362,308 + AO353_19845 0.67 -0.5
4,362,308 + +0.7
4,362,308 + AO353_19845 0.67 +0.4
4,362,308 + AO353_19845 0.67 +0.7
4,362,308 + AO353_19845 0.67 +0.5
4,362,308 + AO353_19845 0.67 -0.4
4,362,308 + AO353_19845 0.67 -0.2
4,362,308 + AO353_19845 0.67 +0.9
4,362,308 + AO353_19845 0.67 -0.4
4,362,308 + AO353_19845 0.67 -1.1
4,362,308 + AO353_19845 0.67 -0.1
4,362,308 + AO353_19845 0.67 +0.1
4,362,308 + AO353_19845 0.67 +0.2
4,362,309 - AO353_19845 0.67 -0.1
4,362,309 - AO353_19845 0.67 -1.1
4,362,309 - AO353_19845 0.67 -1.1
4,362,309 - AO353_19845 0.67 +0.1
4,362,309 - AO353_19845 0.67 -1.4
4,362,309 - AO353_19845 0.67 +0.1
4,362,309 - AO353_19845 0.67 -0.8
4,362,309 - AO353_19845 0.67 +0.2
4,362,309 - AO353_19845 0.67 +0.3
4,362,309 - AO353_19845 0.67 +0.3
4,362,309 - AO353_19845 0.67 -0.0
4,362,309 - AO353_19845 0.67 +0.4
4,362,309 - AO353_19845 0.67 -0.6
4,362,309 - AO353_19845 0.67 -0.7
4,362,309 - AO353_19845 0.67 +0.3
4,362,309 - AO353_19845 0.67 -1.1
4,362,405 + AO353_19845 0.74 +0.1
4,362,405 + AO353_19845 0.74 -0.3
4,362,406 - AO353_19845 0.74 -1.1
4,362,424 + AO353_19845 0.76 -0.1
4,362,424 + AO353_19845 0.76 -0.0
4,362,424 + AO353_19845 0.76 -0.3
4,362,424 + AO353_19845 0.76 -1.3
4,362,425 - AO353_19845 0.76 +0.4

Or see this region's nucleotide sequence