Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_05590

Experiment: D-Mannose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_05570 and AO353_05575 are separated by 139 nucleotidesAO353_05575 and AO353_05580 are separated by 96 nucleotidesAO353_05580 and AO353_05585 are separated by 22 nucleotidesAO353_05585 and AO353_05590 are separated by 4 nucleotidesAO353_05590 and AO353_05595 are separated by 66 nucleotides AO353_05570: AO353_05570 - ribosome maturation protein RimP, at 1,233,414 to 1,233,872 _05570 AO353_05575: AO353_05575 - tRNA-Met, at 1,234,012 to 1,234,088 _05575 AO353_05580: AO353_05580 - tRNA-Leu, at 1,234,185 to 1,234,270 _05580 AO353_05585: AO353_05585 - preprotein translocase subunit SecG, at 1,234,293 to 1,234,676 _05585 AO353_05590: AO353_05590 - triosephosphate isomerase, at 1,234,681 to 1,235,436 _05590 AO353_05595: AO353_05595 - phosphoglucosamine mutase, at 1,235,503 to 1,236,840 _05595 Position (kb) 1234 1235 1236Strain fitness (log2 ratio) -2 -1 0 1 2at 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.893 kb on - strandat 1233.904 kb on - strandat 1233.904 kb on - strandat 1233.904 kb on - strandat 1233.964 kb on - strandat 1233.966 kb on - strandat 1234.108 kb on - strandat 1234.108 kb on - strandat 1234.108 kb on - strandat 1234.110 kb on - strandat 1234.110 kb on - strandat 1234.136 kb on + strandat 1234.137 kb on - strandat 1234.137 kb on - strandat 1234.137 kb on - strandat 1234.137 kb on - strandat 1234.137 kb on - strandat 1234.137 kb on - strandat 1234.137 kb on - strandat 1234.149 kb on - strandat 1234.149 kb on - strandat 1234.149 kb on - strandat 1234.274 kb on - strandat 1234.274 kb on - strandat 1234.274 kb on - strandat 1234.277 kb on - strandat 1234.277 kb on - strandat 1234.277 kb on - strandat 1234.277 kb on - strandat 1234.277 kb on - strandat 1234.277 kb on - strandat 1234.277 kb on - strandat 1234.295 kb on - strandat 1234.295 kb on - strandat 1234.295 kb on - strandat 1234.423 kb on - strand, within AO353_05585at 1234.423 kb on - strand, within AO353_05585at 1234.423 kb on - strand, within AO353_05585at 1235.425 kb on - strandat 1235.442 kb on - strandat 1235.442 kb on - strandat 1235.488 kb on - strandat 1235.488 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose (C)
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1,233,893 - -0.2
1,233,893 - +0.4
1,233,893 - -2.1
1,233,893 - -0.6
1,233,893 - -0.9
1,233,893 - -0.1
1,233,893 - -1.5
1,233,893 - -2.2
1,233,893 - +0.2
1,233,893 - +0.2
1,233,904 - +0.5
1,233,904 - +1.3
1,233,904 - -0.4
1,233,964 - +0.4
1,233,966 - -0.2
1,234,108 - +0.8
1,234,108 - -0.5
1,234,108 - -0.9
1,234,110 - +0.4
1,234,110 - +1.9
1,234,136 + -0.3
1,234,137 - +0.2
1,234,137 - -0.1
1,234,137 - -0.2
1,234,137 - -0.3
1,234,137 - -0.7
1,234,137 - -1.0
1,234,137 - -0.9
1,234,149 - +0.3
1,234,149 - +0.2
1,234,149 - -1.8
1,234,274 - +0.2
1,234,274 - -0.5
1,234,274 - -0.6
1,234,277 - -0.8
1,234,277 - -1.3
1,234,277 - +0.4
1,234,277 - -0.1
1,234,277 - -1.1
1,234,277 - +1.0
1,234,277 - -0.1
1,234,295 - -1.1
1,234,295 - +0.6
1,234,295 - -0.3
1,234,423 - AO353_05585 0.34 +0.6
1,234,423 - AO353_05585 0.34 +1.6
1,234,423 - AO353_05585 0.34 -1.0
1,235,425 - +0.4
1,235,442 - -0.5
1,235,442 - -1.1
1,235,488 - +0.6
1,235,488 - +0.2

Or see this region's nucleotide sequence