Experiment: D-Mannose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_05570 and AO353_05575 are separated by 139 nucleotides AO353_05575 and AO353_05580 are separated by 96 nucleotides AO353_05580 and AO353_05585 are separated by 22 nucleotides AO353_05585 and AO353_05590 are separated by 4 nucleotides AO353_05590 and AO353_05595 are separated by 66 nucleotides
AO353_05570: AO353_05570 - ribosome maturation protein RimP, at 1,233,414 to 1,233,872
_05570
AO353_05575: AO353_05575 - tRNA-Met, at 1,234,012 to 1,234,088
_05575
AO353_05580: AO353_05580 - tRNA-Leu, at 1,234,185 to 1,234,270
_05580
AO353_05585: AO353_05585 - preprotein translocase subunit SecG, at 1,234,293 to 1,234,676
_05585
AO353_05590: AO353_05590 - triosephosphate isomerase, at 1,234,681 to 1,235,436
_05590
AO353_05595: AO353_05595 - phosphoglucosamine mutase, at 1,235,503 to 1,236,840
_05595
Position (kb)
1234
1235
1236 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.893 kb on - strand at 1233.904 kb on - strand at 1233.904 kb on - strand at 1233.904 kb on - strand at 1233.964 kb on - strand at 1233.966 kb on - strand at 1234.108 kb on - strand at 1234.108 kb on - strand at 1234.108 kb on - strand at 1234.110 kb on - strand at 1234.110 kb on - strand at 1234.136 kb on + strand at 1234.137 kb on - strand at 1234.137 kb on - strand at 1234.137 kb on - strand at 1234.137 kb on - strand at 1234.137 kb on - strand at 1234.137 kb on - strand at 1234.137 kb on - strand at 1234.149 kb on - strand at 1234.149 kb on - strand at 1234.149 kb on - strand at 1234.274 kb on - strand at 1234.274 kb on - strand at 1234.274 kb on - strand at 1234.277 kb on - strand at 1234.277 kb on - strand at 1234.277 kb on - strand at 1234.277 kb on - strand at 1234.277 kb on - strand at 1234.277 kb on - strand at 1234.277 kb on - strand at 1234.295 kb on - strand at 1234.295 kb on - strand at 1234.295 kb on - strand at 1234.423 kb on - strand, within AO353_05585 at 1234.423 kb on - strand, within AO353_05585 at 1234.423 kb on - strand, within AO353_05585 at 1235.425 kb on - strand at 1235.442 kb on - strand at 1235.442 kb on - strand at 1235.488 kb on - strand at 1235.488 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose (C) remove 1,233,893 - -0.2 1,233,893 - +0.4 1,233,893 - -2.1 1,233,893 - -0.6 1,233,893 - -0.9 1,233,893 - -0.1 1,233,893 - -1.5 1,233,893 - -2.2 1,233,893 - +0.2 1,233,893 - +0.2 1,233,904 - +0.5 1,233,904 - +1.3 1,233,904 - -0.4 1,233,964 - +0.4 1,233,966 - -0.2 1,234,108 - +0.8 1,234,108 - -0.5 1,234,108 - -0.9 1,234,110 - +0.4 1,234,110 - +1.9 1,234,136 + -0.3 1,234,137 - +0.2 1,234,137 - -0.1 1,234,137 - -0.2 1,234,137 - -0.3 1,234,137 - -0.7 1,234,137 - -1.0 1,234,137 - -0.9 1,234,149 - +0.3 1,234,149 - +0.2 1,234,149 - -1.8 1,234,274 - +0.2 1,234,274 - -0.5 1,234,274 - -0.6 1,234,277 - -0.8 1,234,277 - -1.3 1,234,277 - +0.4 1,234,277 - -0.1 1,234,277 - -1.1 1,234,277 - +1.0 1,234,277 - -0.1 1,234,295 - -1.1 1,234,295 - +0.6 1,234,295 - -0.3 1,234,423 - AO353_05585 0.34 +0.6 1,234,423 - AO353_05585 0.34 +1.6 1,234,423 - AO353_05585 0.34 -1.0 1,235,425 - +0.4 1,235,442 - -0.5 1,235,442 - -1.1 1,235,488 - +0.6 1,235,488 - +0.2
Or see this region's nucleotide sequence