Experiment: Casamino Acids (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0439 and BT0440 are separated by 14 nucleotides BT0440 and BT0441 are separated by 9 nucleotides
BT0439: BT0439 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 530,005 to 533,124
BT0439
BT0440: BT0440 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 533,139 to 535,022
BT0440
BT0441: BT0441 - hypothetical protein (NCBI ptt file), at 535,032 to 536,420
BT0441
Position (kb) 533
534
535
536 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 532.225 kb on - strand, within BT0439 at 532.354 kb on + strand, within BT0439 at 532.355 kb on - strand, within BT0439 at 532.355 kb on - strand, within BT0439 at 532.422 kb on + strand, within BT0439 at 532.422 kb on + strand, within BT0439 at 532.641 kb on - strand, within BT0439 at 532.656 kb on + strand, within BT0439 at 532.723 kb on - strand, within BT0439 at 532.837 kb on - strand at 532.892 kb on - strand at 532.903 kb on - strand at 532.903 kb on - strand at 532.903 kb on - strand at 532.943 kb on - strand at 532.996 kb on + strand at 533.077 kb on + strand at 533.173 kb on + strand at 533.303 kb on + strand at 533.465 kb on + strand, within BT0440 at 533.486 kb on + strand, within BT0440 at 533.488 kb on + strand, within BT0440 at 533.540 kb on + strand, within BT0440 at 533.541 kb on - strand, within BT0440 at 533.581 kb on - strand, within BT0440 at 533.672 kb on + strand, within BT0440 at 533.714 kb on + strand, within BT0440 at 533.772 kb on - strand, within BT0440 at 533.838 kb on - strand, within BT0440 at 533.877 kb on + strand, within BT0440 at 533.934 kb on - strand, within BT0440 at 533.958 kb on - strand, within BT0440 at 534.092 kb on + strand, within BT0440 at 534.112 kb on + strand, within BT0440 at 534.126 kb on + strand, within BT0440 at 534.196 kb on + strand, within BT0440 at 534.200 kb on + strand, within BT0440 at 534.265 kb on + strand, within BT0440 at 534.356 kb on + strand, within BT0440 at 534.439 kb on + strand, within BT0440 at 534.449 kb on + strand, within BT0440 at 534.511 kb on - strand, within BT0440 at 534.513 kb on - strand, within BT0440 at 534.669 kb on - strand, within BT0440 at 534.998 kb on + strand at 535.025 kb on - strand at 535.030 kb on + strand at 535.104 kb on - strand at 535.131 kb on - strand at 535.158 kb on - strand at 535.161 kb on + strand at 535.285 kb on - strand, within BT0441 at 535.285 kb on - strand, within BT0441 at 535.332 kb on + strand, within BT0441 at 535.333 kb on - strand, within BT0441 at 535.519 kb on + strand, within BT0441 at 535.519 kb on + strand, within BT0441 at 535.526 kb on + strand, within BT0441 at 535.702 kb on - strand, within BT0441 at 535.704 kb on - strand, within BT0441 at 535.775 kb on - strand, within BT0441 at 535.849 kb on - strand, within BT0441 at 535.863 kb on + strand, within BT0441 at 535.863 kb on + strand, within BT0441 at 535.864 kb on - strand, within BT0441 at 535.868 kb on - strand, within BT0441 at 535.883 kb on + strand, within BT0441 at 535.884 kb on - strand, within BT0441 at 535.904 kb on + strand, within BT0441 at 535.907 kb on - strand, within BT0441 at 535.941 kb on - strand, within BT0441 at 535.985 kb on - strand, within BT0441
Per-strain Table
Position Strand Gene LocusTag Fraction Casamino Acids (N) remove 532,225 - BT0439 0.71 -0.5 532,354 + BT0439 0.75 +1.5 532,355 - BT0439 0.75 -1.2 532,355 - BT0439 0.75 +0.1 532,422 + BT0439 0.77 -1.1 532,422 + BT0439 0.77 -0.5 532,641 - BT0439 0.84 +0.5 532,656 + BT0439 0.85 +1.0 532,723 - BT0439 0.87 -1.2 532,837 - -0.5 532,892 - +0.9 532,903 - -1.6 532,903 - -0.2 532,903 - -0.1 532,943 - +0.6 532,996 + -2.0 533,077 + -0.5 533,173 + +0.5 533,303 + -0.9 533,465 + BT0440 0.17 -0.1 533,486 + BT0440 0.18 -0.9 533,488 + BT0440 0.19 -1.4 533,540 + BT0440 0.21 -0.2 533,541 - BT0440 0.21 -0.9 533,581 - BT0440 0.23 -0.1 533,672 + BT0440 0.28 -1.5 533,714 + BT0440 0.31 +3.5 533,772 - BT0440 0.34 -1.7 533,838 - BT0440 0.37 -0.4 533,877 + BT0440 0.39 +1.5 533,934 - BT0440 0.42 +0.1 533,958 - BT0440 0.43 -0.8 534,092 + BT0440 0.51 -0.9 534,112 + BT0440 0.52 -0.9 534,126 + BT0440 0.52 -1.1 534,196 + BT0440 0.56 -0.1 534,200 + BT0440 0.56 -1.7 534,265 + BT0440 0.60 -1.4 534,356 + BT0440 0.65 +0.1 534,439 + BT0440 0.69 +0.9 534,449 + BT0440 0.70 +0.2 534,511 - BT0440 0.73 -1.1 534,513 - BT0440 0.73 -1.7 534,669 - BT0440 0.81 -1.9 534,998 + -0.1 535,025 - -1.0 535,030 + -1.1 535,104 - +0.9 535,131 - -1.9 535,158 - -0.4 535,161 + -1.0 535,285 - BT0441 0.18 -1.6 535,285 - BT0441 0.18 -0.4 535,332 + BT0441 0.22 -0.4 535,333 - BT0441 0.22 +1.5 535,519 + BT0441 0.35 -0.9 535,519 + BT0441 0.35 +0.3 535,526 + BT0441 0.36 +0.5 535,702 - BT0441 0.48 -1.1 535,704 - BT0441 0.48 +1.0 535,775 - BT0441 0.53 +0.1 535,849 - BT0441 0.59 -0.9 535,863 + BT0441 0.60 +1.5 535,863 + BT0441 0.60 -0.5 535,864 - BT0441 0.60 -1.1 535,868 - BT0441 0.60 -0.5 535,883 + BT0441 0.61 -0.5 535,884 - BT0441 0.61 -1.1 535,904 + BT0441 0.63 -0.4 535,907 - BT0441 0.63 -1.4 535,941 - BT0441 0.65 +1.2 535,985 - BT0441 0.69 -0.5
Or see this region's nucleotide sequence