Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_814

Experiment: LB 20C

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_813 and Pf1N1B4_814 are separated by 514 nucleotidesPf1N1B4_814 and Pf1N1B4_815 overlap by 4 nucleotidesPf1N1B4_815 and Pf1N1B4_816 are separated by 161 nucleotides Pf1N1B4_813 - hypothetical protein, at 931,282 to 931,776 _813 Pf1N1B4_814 - Transcriptional regulator, PadR family, at 932,291 to 932,872 _814 Pf1N1B4_815 - iron-chelator utilization protein, at 932,869 to 933,666 _815 Pf1N1B4_816 - Integral membrane protein, at 933,828 to 934,433 _816 Position (kb) 932 933Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 931.337 kb on + strand, within Pf1N1B4_813at 931.337 kb on + strand, within Pf1N1B4_813at 931.391 kb on + strand, within Pf1N1B4_813at 931.434 kb on + strand, within Pf1N1B4_813at 931.434 kb on + strand, within Pf1N1B4_813at 931.434 kb on + strand, within Pf1N1B4_813at 931.435 kb on - strand, within Pf1N1B4_813at 931.444 kb on + strand, within Pf1N1B4_813at 931.444 kb on + strand, within Pf1N1B4_813at 931.479 kb on + strand, within Pf1N1B4_813at 931.479 kb on + strand, within Pf1N1B4_813at 931.479 kb on + strandat 931.479 kb on + strand, within Pf1N1B4_813at 931.480 kb on - strand, within Pf1N1B4_813at 931.480 kb on - strand, within Pf1N1B4_813at 931.480 kb on - strand, within Pf1N1B4_813at 931.480 kb on - strand, within Pf1N1B4_813at 931.494 kb on - strand, within Pf1N1B4_813at 931.494 kb on - strand, within Pf1N1B4_813at 931.546 kb on + strand, within Pf1N1B4_813at 931.546 kb on + strand, within Pf1N1B4_813at 931.546 kb on + strand, within Pf1N1B4_813at 931.546 kb on + strand, within Pf1N1B4_813at 931.546 kb on + strand, within Pf1N1B4_813at 931.546 kb on + strand, within Pf1N1B4_813at 931.547 kb on - strand, within Pf1N1B4_813at 931.547 kb on - strand, within Pf1N1B4_813at 931.547 kb on - strand, within Pf1N1B4_813at 931.547 kb on - strand, within Pf1N1B4_813at 931.547 kb on - strand, within Pf1N1B4_813at 931.547 kb on - strand, within Pf1N1B4_813at 931.547 kb on - strand, within Pf1N1B4_813at 931.556 kb on + strand, within Pf1N1B4_813at 931.557 kb on - strand, within Pf1N1B4_813at 931.646 kb on + strand, within Pf1N1B4_813at 931.646 kb on + strand, within Pf1N1B4_813at 931.646 kb on + strand, within Pf1N1B4_813at 931.646 kb on + strand, within Pf1N1B4_813at 931.647 kb on - strand, within Pf1N1B4_813at 931.778 kb on + strandat 931.779 kb on - strandat 931.781 kb on + strandat 931.797 kb on + strandat 931.797 kb on + strandat 932.108 kb on + strandat 932.146 kb on + strandat 932.148 kb on + strandat 932.148 kb on + strandat 932.148 kb on + strandat 932.251 kb on + strandat 932.267 kb on + strandat 932.460 kb on - strand, within Pf1N1B4_814at 932.502 kb on - strand, within Pf1N1B4_814at 932.525 kb on + strand, within Pf1N1B4_814at 932.626 kb on - strand, within Pf1N1B4_814at 932.809 kb on + strand, within Pf1N1B4_814at 932.810 kb on - strand, within Pf1N1B4_814at 932.989 kb on - strand, within Pf1N1B4_815at 932.989 kb on - strand, within Pf1N1B4_815at 932.989 kb on - strand, within Pf1N1B4_815at 933.044 kb on + strand, within Pf1N1B4_815at 933.044 kb on + strand, within Pf1N1B4_815at 933.044 kb on + strand, within Pf1N1B4_815at 933.045 kb on - strand, within Pf1N1B4_815at 933.045 kb on - strand, within Pf1N1B4_815at 933.045 kb on - strand, within Pf1N1B4_815at 933.045 kb on - strand, within Pf1N1B4_815at 933.045 kb on - strand, within Pf1N1B4_815at 933.145 kb on + strand, within Pf1N1B4_815at 933.146 kb on - strand, within Pf1N1B4_815at 933.146 kb on - strand, within Pf1N1B4_815at 933.160 kb on + strand, within Pf1N1B4_815at 933.310 kb on + strand, within Pf1N1B4_815at 933.310 kb on + strand, within Pf1N1B4_815at 933.311 kb on - strand, within Pf1N1B4_815at 933.311 kb on - strandat 933.311 kb on - strandat 933.311 kb on - strand, within Pf1N1B4_815at 933.535 kb on + strand, within Pf1N1B4_815at 933.535 kb on + strand, within Pf1N1B4_815at 933.536 kb on - strand, within Pf1N1B4_815at 933.584 kb on + strand, within Pf1N1B4_815at 933.664 kb on + strandat 933.694 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB 20C
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931,337 + Pf1N1B4_813 0.11 -1.6
931,337 + Pf1N1B4_813 0.11 +0.9
931,391 + Pf1N1B4_813 0.22 -0.9
931,434 + Pf1N1B4_813 0.31 -0.7
931,434 + Pf1N1B4_813 0.31 +0.1
931,434 + Pf1N1B4_813 0.31 -1.0
931,435 - Pf1N1B4_813 0.31 +0.3
931,444 + Pf1N1B4_813 0.33 +0.5
931,444 + Pf1N1B4_813 0.33 +0.1
931,479 + Pf1N1B4_813 0.40 +0.1
931,479 + Pf1N1B4_813 0.40 +0.4
931,479 + +0.3
931,479 + Pf1N1B4_813 0.40 -0.2
931,480 - Pf1N1B4_813 0.40 -2.9
931,480 - Pf1N1B4_813 0.40 -0.6
931,480 - Pf1N1B4_813 0.40 -0.8
931,480 - Pf1N1B4_813 0.40 -0.1
931,494 - Pf1N1B4_813 0.43 -0.3
931,494 - Pf1N1B4_813 0.43 -1.4
931,546 + Pf1N1B4_813 0.53 +1.3
931,546 + Pf1N1B4_813 0.53 +0.4
931,546 + Pf1N1B4_813 0.53 +0.1
931,546 + Pf1N1B4_813 0.53 +0.3
931,546 + Pf1N1B4_813 0.53 +0.5
931,546 + Pf1N1B4_813 0.53 +0.7
931,547 - Pf1N1B4_813 0.54 -1.0
931,547 - Pf1N1B4_813 0.54 -0.2
931,547 - Pf1N1B4_813 0.54 -0.4
931,547 - Pf1N1B4_813 0.54 +1.3
931,547 - Pf1N1B4_813 0.54 +0.1
931,547 - Pf1N1B4_813 0.54 +0.7
931,547 - Pf1N1B4_813 0.54 -0.3
931,556 + Pf1N1B4_813 0.55 +0.1
931,557 - Pf1N1B4_813 0.56 +0.1
931,646 + Pf1N1B4_813 0.74 +0.7
931,646 + Pf1N1B4_813 0.74 +0.4
931,646 + Pf1N1B4_813 0.74 +0.0
931,646 + Pf1N1B4_813 0.74 -1.6
931,647 - Pf1N1B4_813 0.74 -0.0
931,778 + -0.5
931,779 - -0.4
931,781 + -0.0
931,797 + -1.1
931,797 + +0.6
932,108 + +0.6
932,146 + -0.4
932,148 + +0.2
932,148 + +0.3
932,148 + -0.6
932,251 + +0.2
932,267 + +0.1
932,460 - Pf1N1B4_814 0.29 -0.9
932,502 - Pf1N1B4_814 0.36 -0.6
932,525 + Pf1N1B4_814 0.40 -1.1
932,626 - Pf1N1B4_814 0.58 +0.1
932,809 + Pf1N1B4_814 0.89 -0.9
932,810 - Pf1N1B4_814 0.89 -0.4
932,989 - Pf1N1B4_815 0.15 +0.3
932,989 - Pf1N1B4_815 0.15 +0.5
932,989 - Pf1N1B4_815 0.15 +1.4
933,044 + Pf1N1B4_815 0.22 +1.4
933,044 + Pf1N1B4_815 0.22 -0.6
933,044 + Pf1N1B4_815 0.22 +2.2
933,045 - Pf1N1B4_815 0.22 -1.1
933,045 - Pf1N1B4_815 0.22 +0.2
933,045 - Pf1N1B4_815 0.22 -0.2
933,045 - Pf1N1B4_815 0.22 -0.4
933,045 - Pf1N1B4_815 0.22 -0.8
933,145 + Pf1N1B4_815 0.35 +0.7
933,146 - Pf1N1B4_815 0.35 -0.4
933,146 - Pf1N1B4_815 0.35 +0.3
933,160 + Pf1N1B4_815 0.36 -0.1
933,310 + Pf1N1B4_815 0.55 -0.0
933,310 + Pf1N1B4_815 0.55 +0.2
933,311 - Pf1N1B4_815 0.55 +0.9
933,311 - +1.0
933,311 - +2.6
933,311 - Pf1N1B4_815 0.55 -0.3
933,535 + Pf1N1B4_815 0.83 -0.1
933,535 + Pf1N1B4_815 0.83 +0.6
933,536 - Pf1N1B4_815 0.84 -0.8
933,584 + Pf1N1B4_815 0.90 -1.7
933,664 + -1.3
933,694 - +0.3

Or see this region's nucleotide sequence