Experiment: LB 20C
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_475 and Pf1N1B4_476 overlap by 4 nucleotides Pf1N1B4_476 and Pf1N1B4_477 are separated by 132 nucleotides Pf1N1B4_477 and Pf1N1B4_478 are separated by 91 nucleotides
Pf1N1B4_475 - ABC-type multidrug transport system, permease component, at 567,254 to 568,033
_475
Pf1N1B4_476 - ABC-type multidrug transport system, ATPase component, at 568,030 to 568,962
_476
Pf1N1B4_477 - Uncharacterized glutathione S-transferase-like protein, at 569,095 to 569,670
_477
Pf1N1B4_478 - Transglutaminase-like enzymes, putative cysteine proteases, at 569,762 to 570,421
_478
Position (kb) 568
569 Strain fitness (log2 ratio) -2
-1
0
1
2 at 567.111 kb on + strand at 567.111 kb on + strand at 567.151 kb on + strand at 567.152 kb on - strand at 567.152 kb on - strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.155 kb on + strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.156 kb on - strand at 567.213 kb on - strand at 567.213 kb on - strand at 567.224 kb on - strand at 567.250 kb on + strand at 567.251 kb on - strand at 567.303 kb on + strand at 567.303 kb on + strand at 567.303 kb on + strand at 567.303 kb on + strand at 567.304 kb on - strand at 567.304 kb on - strand at 567.304 kb on - strand at 567.304 kb on - strand at 567.304 kb on - strand at 567.304 kb on - strand at 567.304 kb on - strand at 567.304 kb on - strand at 567.304 kb on - strand at 567.304 kb on - strand at 567.304 kb on - strand at 567.321 kb on - strand at 567.460 kb on - strand, within Pf1N1B4_475 at 567.518 kb on - strand, within Pf1N1B4_475 at 567.700 kb on - strand at 567.798 kb on + strand, within Pf1N1B4_475 at 567.843 kb on + strand, within Pf1N1B4_475 at 567.843 kb on + strand, within Pf1N1B4_475 at 567.844 kb on - strand, within Pf1N1B4_475 at 567.852 kb on + strand at 567.852 kb on + strand, within Pf1N1B4_475 at 567.852 kb on + strand, within Pf1N1B4_475 at 567.853 kb on - strand, within Pf1N1B4_475 at 567.853 kb on - strand, within Pf1N1B4_475 at 567.912 kb on + strand, within Pf1N1B4_475 at 567.913 kb on - strand, within Pf1N1B4_475 at 567.995 kb on - strand at 568.012 kb on + strand at 568.012 kb on + strand at 568.012 kb on + strand at 568.013 kb on - strand at 568.156 kb on - strand, within Pf1N1B4_476 at 568.191 kb on + strand, within Pf1N1B4_476 at 568.605 kb on - strand, within Pf1N1B4_476 at 568.646 kb on + strand, within Pf1N1B4_476 at 568.649 kb on + strand, within Pf1N1B4_476 at 568.650 kb on - strand, within Pf1N1B4_476 at 568.773 kb on + strand, within Pf1N1B4_476 at 568.773 kb on + strand, within Pf1N1B4_476 at 568.774 kb on - strand at 568.996 kb on + strand at 568.997 kb on - strand at 568.997 kb on - strand at 569.000 kb on + strand at 569.000 kb on + strand at 569.001 kb on - strand at 569.001 kb on - strand at 569.001 kb on - strand at 569.020 kb on + strand at 569.020 kb on + strand at 569.020 kb on + strand at 569.020 kb on + strand at 569.021 kb on - strand at 569.068 kb on + strand at 569.068 kb on + strand at 569.068 kb on + strand at 569.069 kb on - strand at 569.069 kb on - strand at 569.069 kb on - strand at 569.069 kb on - strand at 569.094 kb on - strand at 569.094 kb on - strand at 569.096 kb on + strand at 569.096 kb on + strand at 569.096 kb on + strand at 569.097 kb on - strand at 569.097 kb on - strand at 569.097 kb on - strand at 569.097 kb on - strand at 569.097 kb on - strand at 569.097 kb on - strand at 569.097 kb on - strand at 569.097 kb on - strand at 569.097 kb on - strand at 569.097 kb on - strand at 569.151 kb on + strand at 569.152 kb on - strand at 569.153 kb on + strand, within Pf1N1B4_477 at 569.153 kb on + strand, within Pf1N1B4_477 at 569.154 kb on - strand, within Pf1N1B4_477 at 569.154 kb on - strand, within Pf1N1B4_477 at 569.210 kb on + strand, within Pf1N1B4_477 at 569.210 kb on + strand, within Pf1N1B4_477 at 569.210 kb on + strand, within Pf1N1B4_477 at 569.210 kb on + strand at 569.211 kb on - strand, within Pf1N1B4_477 at 569.211 kb on - strand, within Pf1N1B4_477 at 569.264 kb on + strand, within Pf1N1B4_477 at 569.264 kb on + strand, within Pf1N1B4_477 at 569.265 kb on - strand, within Pf1N1B4_477 at 569.605 kb on + strand, within Pf1N1B4_477 at 569.606 kb on - strand at 569.606 kb on - strand, within Pf1N1B4_477 at 569.754 kb on - strand at 569.901 kb on + strand, within Pf1N1B4_478 at 569.902 kb on - strand, within Pf1N1B4_478 at 569.902 kb on - strand, within Pf1N1B4_478 at 569.902 kb on - strand, within Pf1N1B4_478 at 569.931 kb on + strand, within Pf1N1B4_478 at 569.931 kb on + strand, within Pf1N1B4_478 at 569.932 kb on - strand, within Pf1N1B4_478
Per-strain Table
Position Strand Gene LocusTag Fraction LB 20C remove 567,111 + +0.0 567,111 + -0.8 567,151 + +1.0 567,152 - -1.0 567,152 - +0.2 567,155 + +0.2 567,155 + +0.1 567,155 + -0.0 567,155 + +0.0 567,155 + +0.8 567,155 + -1.9 567,155 + -0.2 567,155 + -0.9 567,155 + +0.3 567,155 + -1.7 567,155 + +0.7 567,155 + +1.2 567,155 + +0.9 567,155 + -0.2 567,155 + -1.3 567,155 + +0.2 567,155 + -0.8 567,156 - -0.1 567,156 - -0.0 567,156 - -1.9 567,156 - -0.0 567,156 - +0.2 567,156 - -1.0 567,156 - +1.8 567,156 - -1.7 567,156 - +0.6 567,156 - -2.2 567,156 - -1.0 567,156 - +0.4 567,156 - +0.8 567,156 - +1.7 567,156 - -1.5 567,156 - +0.8 567,156 - +0.5 567,156 - -2.4 567,156 - -0.3 567,156 - -0.9 567,213 - +1.4 567,213 - +0.9 567,224 - -0.9 567,250 + +0.0 567,251 - +0.2 567,303 + -0.6 567,303 + +0.6 567,303 + -0.2 567,303 + +0.4 567,304 - +0.2 567,304 - -1.2 567,304 - +0.8 567,304 - +0.8 567,304 - -2.1 567,304 - +0.4 567,304 - +0.3 567,304 - -0.4 567,304 - +0.4 567,304 - -0.2 567,304 - -0.4 567,321 - -0.0 567,460 - Pf1N1B4_475 0.26 -1.0 567,518 - Pf1N1B4_475 0.34 -1.8 567,700 - +1.0 567,798 + Pf1N1B4_475 0.70 -1.6 567,843 + Pf1N1B4_475 0.76 -1.0 567,843 + Pf1N1B4_475 0.76 -0.3 567,844 - Pf1N1B4_475 0.76 +1.4 567,852 + +0.4 567,852 + Pf1N1B4_475 0.77 -2.1 567,852 + Pf1N1B4_475 0.77 -0.5 567,853 - Pf1N1B4_475 0.77 +0.2 567,853 - Pf1N1B4_475 0.77 +1.6 567,912 + Pf1N1B4_475 0.84 -0.3 567,913 - Pf1N1B4_475 0.84 +0.9 567,995 - -0.5 568,012 + +0.4 568,012 + -2.2 568,012 + +1.2 568,013 - +1.2 568,156 - Pf1N1B4_476 0.14 -0.7 568,191 + Pf1N1B4_476 0.17 +0.9 568,605 - Pf1N1B4_476 0.62 -1.1 568,646 + Pf1N1B4_476 0.66 -0.3 568,649 + Pf1N1B4_476 0.66 -1.9 568,650 - Pf1N1B4_476 0.66 -1.0 568,773 + Pf1N1B4_476 0.80 -0.4 568,773 + Pf1N1B4_476 0.80 -1.0 568,774 - +0.4 568,996 + -1.2 568,997 - +0.4 568,997 - -0.6 569,000 + +2.2 569,000 + -2.0 569,001 - +0.0 569,001 - +0.6 569,001 - +0.0 569,020 + +0.6 569,020 + -0.2 569,020 + -1.1 569,020 + -0.0 569,021 - -2.3 569,068 + +0.4 569,068 + -1.1 569,068 + +0.1 569,069 - -0.3 569,069 - -0.1 569,069 - +0.5 569,069 - -1.3 569,094 - -1.5 569,094 - +0.1 569,096 + -0.5 569,096 + +0.2 569,096 + +1.3 569,097 - -1.2 569,097 - -1.2 569,097 - -0.8 569,097 - -1.0 569,097 - -0.4 569,097 - -0.8 569,097 - +0.4 569,097 - +1.0 569,097 - -0.5 569,097 - -0.8 569,151 + +0.5 569,152 - +1.9 569,153 + Pf1N1B4_477 0.10 +0.0 569,153 + Pf1N1B4_477 0.10 -0.0 569,154 - Pf1N1B4_477 0.10 +0.2 569,154 - Pf1N1B4_477 0.10 -0.1 569,210 + Pf1N1B4_477 0.20 +0.4 569,210 + Pf1N1B4_477 0.20 +0.0 569,210 + Pf1N1B4_477 0.20 +0.3 569,210 + +1.0 569,211 - Pf1N1B4_477 0.20 -0.1 569,211 - Pf1N1B4_477 0.20 +1.3 569,264 + Pf1N1B4_477 0.29 -0.2 569,264 + Pf1N1B4_477 0.29 -0.0 569,265 - Pf1N1B4_477 0.30 +0.0 569,605 + Pf1N1B4_477 0.89 -0.2 569,606 - -1.0 569,606 - Pf1N1B4_477 0.89 +0.3 569,754 - -0.5 569,901 + Pf1N1B4_478 0.21 -1.4 569,902 - Pf1N1B4_478 0.21 +0.6 569,902 - Pf1N1B4_478 0.21 +1.6 569,902 - Pf1N1B4_478 0.21 +0.8 569,931 + Pf1N1B4_478 0.26 -0.0 569,931 + Pf1N1B4_478 0.26 -0.3 569,932 - Pf1N1B4_478 0.26 +0.2
Or see this region's nucleotide sequence