Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS08715 and MMP_RS08720 are separated by 29 nucleotides MMP_RS08720 and MMP_RS09070 are separated by 89 nucleotides MMP_RS09070 and MMP_RS08725 are separated by 15 nucleotides
MMP_RS08715: MMP_RS08715 - formylmethanofuran dehydrogenase subunit B, at 1,631,371 to 1,632,675
_RS08715
MMP_RS08720: MMP_RS08720 - 4Fe-4S binding protein, at 1,632,705 to 1,633,892
_RS08720
MMP_RS09070: MMP_RS09070 - F420 non-reducing hydrogenase subunit, at 1,633,982 to 1,634,116
_RS09070
MMP_RS08725: MMP_RS08725 - Ni/Fe hydrogenase subunit alpha, at 1,634,132 to 1,635,388
_RS08725
Position (kb)
1632
1633
1634 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1631.827 kb on + strand, within MMP_RS08715 at 1631.829 kb on - strand, within MMP_RS08715 at 1632.471 kb on + strand, within MMP_RS08715 at 1632.652 kb on - strand at 1632.782 kb on - strand at 1633.411 kb on + strand, within MMP_RS08720 at 1633.412 kb on - strand, within MMP_RS08720 at 1633.668 kb on - strand, within MMP_RS08720 at 1633.746 kb on - strand, within MMP_RS08720 at 1634.354 kb on - strand, within MMP_RS08725 at 1634.721 kb on - strand, within MMP_RS08725
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 1,631,827 + MMP_RS08715 0.35 -2.9 1,631,829 - MMP_RS08715 0.35 -1.1 1,632,471 + MMP_RS08715 0.84 -1.2 1,632,652 - -1.6 1,632,782 - -2.0 1,633,411 + MMP_RS08720 0.59 -1.0 1,633,412 - MMP_RS08720 0.60 -2.7 1,633,668 - MMP_RS08720 0.81 -1.4 1,633,746 - MMP_RS08720 0.88 -0.5 1,634,354 - MMP_RS08725 0.18 -0.5 1,634,721 - MMP_RS08725 0.47 -0.5
Or see this region's nucleotide sequence