Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04835 and MMP_RS04840 are separated by 15 nucleotides MMP_RS04840 and MMP_RS04845 are separated by 84 nucleotides MMP_RS04845 and MMP_RS04850 are separated by 275 nucleotides MMP_RS04850 and MMP_RS04855 are separated by 5 nucleotides
MMP_RS04835: MMP_RS04835 - chemotaxis protein CheC, at 920,951 to 921,640
_RS04835
MMP_RS04840: MMP_RS04840 - response regulator, at 921,656 to 922,027
_RS04840
MMP_RS04845: MMP_RS04845 - CheF family chemotaxis protein, at 922,112 to 923,158
_RS04845
MMP_RS04850: MMP_RS04850 - UPF0254 family protein, at 923,434 to 923,931
_RS04850
MMP_RS04855: MMP_RS04855 - shikimate dehydrogenase, at 923,937 to 924,773
_RS04855
Position (kb) 922
923
924 Strain fitness (log2 ratio) -2
-1
0
1 at 921.160 kb on - strand, within MMP_RS04835 at 921.161 kb on + strand, within MMP_RS04835 at 921.167 kb on + strand, within MMP_RS04835 at 921.383 kb on + strand, within MMP_RS04835 at 921.408 kb on + strand, within MMP_RS04835 at 921.408 kb on + strand, within MMP_RS04835 at 921.434 kb on - strand, within MMP_RS04835 at 921.543 kb on + strand, within MMP_RS04835 at 921.643 kb on - strand at 921.710 kb on - strand, within MMP_RS04840 at 921.711 kb on + strand, within MMP_RS04840 at 921.715 kb on - strand, within MMP_RS04840 at 921.715 kb on - strand, within MMP_RS04840 at 921.716 kb on + strand, within MMP_RS04840 at 921.716 kb on + strand, within MMP_RS04840 at 921.717 kb on - strand, within MMP_RS04840 at 921.718 kb on + strand, within MMP_RS04840 at 921.718 kb on + strand, within MMP_RS04840 at 921.737 kb on - strand, within MMP_RS04840 at 921.738 kb on + strand, within MMP_RS04840 at 921.776 kb on + strand, within MMP_RS04840 at 921.783 kb on + strand, within MMP_RS04840 at 921.783 kb on + strand, within MMP_RS04840 at 921.785 kb on - strand, within MMP_RS04840 at 921.898 kb on - strand, within MMP_RS04840 at 921.940 kb on + strand, within MMP_RS04840 at 921.998 kb on - strand at 921.999 kb on + strand at 922.031 kb on - strand at 922.032 kb on + strand at 922.032 kb on + strand at 922.046 kb on + strand at 922.063 kb on - strand at 922.063 kb on - strand at 922.074 kb on - strand at 922.077 kb on - strand at 922.077 kb on - strand at 922.077 kb on - strand at 922.078 kb on + strand at 922.080 kb on - strand at 922.086 kb on - strand at 922.097 kb on - strand at 922.097 kb on - strand at 922.097 kb on - strand at 922.097 kb on - strand at 922.098 kb on + strand at 922.098 kb on + strand at 922.098 kb on + strand at 922.098 kb on + strand at 922.101 kb on - strand at 922.102 kb on + strand at 922.108 kb on - strand at 922.109 kb on + strand at 922.109 kb on + strand at 922.109 kb on + strand at 922.124 kb on + strand at 922.124 kb on + strand at 922.127 kb on + strand at 922.129 kb on - strand at 922.138 kb on - strand at 922.139 kb on + strand at 922.139 kb on + strand at 922.177 kb on - strand at 922.184 kb on + strand at 922.258 kb on - strand, within MMP_RS04845 at 922.290 kb on - strand, within MMP_RS04845 at 922.292 kb on - strand, within MMP_RS04845 at 922.469 kb on - strand, within MMP_RS04845 at 922.570 kb on - strand, within MMP_RS04845 at 922.601 kb on + strand, within MMP_RS04845 at 922.637 kb on - strand, within MMP_RS04845 at 922.806 kb on + strand, within MMP_RS04845 at 922.869 kb on + strand, within MMP_RS04845 at 922.915 kb on + strand, within MMP_RS04845 at 922.988 kb on - strand, within MMP_RS04845 at 923.098 kb on - strand at 923.099 kb on + strand at 923.206 kb on + strand at 923.217 kb on - strand at 923.217 kb on - strand at 923.217 kb on - strand at 923.220 kb on - strand at 923.221 kb on + strand at 923.232 kb on - strand at 923.233 kb on + strand at 923.249 kb on + strand at 923.262 kb on - strand at 923.263 kb on + strand at 923.267 kb on + strand at 923.268 kb on - strand at 923.298 kb on - strand at 923.299 kb on + strand at 923.310 kb on + strand at 923.313 kb on - strand at 923.328 kb on - strand at 923.333 kb on - strand at 923.339 kb on - strand at 923.348 kb on + strand at 923.357 kb on - strand at 923.357 kb on - strand at 923.357 kb on - strand at 923.361 kb on - strand at 923.376 kb on - strand at 923.379 kb on - strand at 923.379 kb on - strand at 923.379 kb on - strand at 923.382 kb on + strand at 923.392 kb on - strand at 923.397 kb on + strand at 923.415 kb on + strand at 923.422 kb on + strand at 923.536 kb on - strand, within MMP_RS04850 at 923.536 kb on - strand, within MMP_RS04850 at 923.537 kb on + strand, within MMP_RS04850 at 923.541 kb on - strand, within MMP_RS04850 at 923.542 kb on + strand, within MMP_RS04850 at 923.558 kb on - strand, within MMP_RS04850 at 923.558 kb on - strand, within MMP_RS04850 at 923.558 kb on - strand, within MMP_RS04850 at 923.558 kb on - strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.559 kb on + strand, within MMP_RS04850 at 923.560 kb on - strand, within MMP_RS04850 at 923.560 kb on - strand, within MMP_RS04850 at 923.560 kb on - strand, within MMP_RS04850 at 923.560 kb on - strand, within MMP_RS04850 at 923.560 kb on - strand, within MMP_RS04850 at 923.561 kb on + strand, within MMP_RS04850 at 923.561 kb on + strand, within MMP_RS04850 at 923.561 kb on + strand, within MMP_RS04850 at 923.564 kb on - strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.565 kb on + strand, within MMP_RS04850 at 923.612 kb on - strand, within MMP_RS04850 at 923.663 kb on + strand, within MMP_RS04850 at 923.664 kb on - strand, within MMP_RS04850 at 923.665 kb on + strand, within MMP_RS04850 at 923.681 kb on - strand, within MMP_RS04850 at 923.696 kb on - strand, within MMP_RS04850 at 923.733 kb on - strand, within MMP_RS04850 at 923.779 kb on + strand, within MMP_RS04850 at 923.784 kb on + strand, within MMP_RS04850 at 923.791 kb on - strand, within MMP_RS04850 at 923.791 kb on - strand, within MMP_RS04850 at 923.801 kb on + strand, within MMP_RS04850 at 923.801 kb on + strand, within MMP_RS04850 at 923.801 kb on + strand, within MMP_RS04850 at 923.817 kb on - strand, within MMP_RS04850 at 923.818 kb on + strand, within MMP_RS04850 at 923.822 kb on + strand, within MMP_RS04850 at 923.832 kb on + strand, within MMP_RS04850 at 923.849 kb on - strand, within MMP_RS04850 at 923.850 kb on + strand, within MMP_RS04850 at 923.850 kb on + strand, within MMP_RS04850 at 923.850 kb on + strand, within MMP_RS04850 at 923.885 kb on + strand at 923.885 kb on + strand at 923.885 kb on + strand at 923.887 kb on + strand at 923.887 kb on + strand at 923.887 kb on + strand at 923.889 kb on - strand at 923.890 kb on + strand at 923.890 kb on + strand at 923.890 kb on + strand at 923.890 kb on + strand at 923.960 kb on + strand at 924.032 kb on - strand at 924.091 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 921,160 - MMP_RS04835 0.30 +0.3 921,161 + MMP_RS04835 0.30 -0.6 921,167 + MMP_RS04835 0.31 +0.4 921,383 + MMP_RS04835 0.63 +0.1 921,408 + MMP_RS04835 0.66 +0.6 921,408 + MMP_RS04835 0.66 -0.4 921,434 - MMP_RS04835 0.70 +0.1 921,543 + MMP_RS04835 0.86 -0.1 921,643 - -0.0 921,710 - MMP_RS04840 0.15 +0.3 921,711 + MMP_RS04840 0.15 +0.7 921,715 - MMP_RS04840 0.16 -0.0 921,715 - MMP_RS04840 0.16 +0.1 921,716 + MMP_RS04840 0.16 -0.7 921,716 + MMP_RS04840 0.16 +0.0 921,717 - MMP_RS04840 0.16 -0.4 921,718 + MMP_RS04840 0.17 +0.1 921,718 + MMP_RS04840 0.17 +0.0 921,737 - MMP_RS04840 0.22 -0.4 921,738 + MMP_RS04840 0.22 +0.7 921,776 + MMP_RS04840 0.32 -0.4 921,783 + MMP_RS04840 0.34 -0.1 921,783 + MMP_RS04840 0.34 +0.0 921,785 - MMP_RS04840 0.35 -0.0 921,898 - MMP_RS04840 0.65 -0.4 921,940 + MMP_RS04840 0.76 -0.1 921,998 - -0.2 921,999 + -0.1 922,031 - +0.5 922,032 + -0.3 922,032 + -0.3 922,046 + +0.2 922,063 - -0.3 922,063 - +0.0 922,074 - -0.1 922,077 - -0.1 922,077 - -0.0 922,077 - +0.1 922,078 + -0.2 922,080 - -0.1 922,086 - +0.2 922,097 - -0.2 922,097 - +0.0 922,097 - -0.3 922,097 - -0.1 922,098 + -0.2 922,098 + +0.3 922,098 + +0.6 922,098 + -0.3 922,101 - +0.3 922,102 + -0.0 922,108 - -0.2 922,109 + -0.6 922,109 + +0.1 922,109 + -0.3 922,124 + -0.3 922,124 + -0.4 922,127 + +0.0 922,129 - +0.1 922,138 - -0.4 922,139 + -0.3 922,139 + -0.1 922,177 - +0.3 922,184 + -0.4 922,258 - MMP_RS04845 0.14 +0.2 922,290 - MMP_RS04845 0.17 +0.3 922,292 - MMP_RS04845 0.17 +0.5 922,469 - MMP_RS04845 0.34 -0.0 922,570 - MMP_RS04845 0.44 +0.3 922,601 + MMP_RS04845 0.47 +0.2 922,637 - MMP_RS04845 0.50 +0.5 922,806 + MMP_RS04845 0.66 -0.5 922,869 + MMP_RS04845 0.72 -0.5 922,915 + MMP_RS04845 0.77 +0.0 922,988 - MMP_RS04845 0.84 -0.3 923,098 - -0.0 923,099 + -0.0 923,206 + -0.2 923,217 - +0.0 923,217 - +0.1 923,217 - -0.0 923,220 - +0.1 923,221 + +0.4 923,232 - +0.1 923,233 + +0.0 923,249 + +0.3 923,262 - +0.4 923,263 + +0.5 923,267 + +0.2 923,268 - +0.2 923,298 - -0.3 923,299 + -0.1 923,310 + +0.2 923,313 - +0.1 923,328 - +0.4 923,333 - +0.2 923,339 - -0.4 923,348 + +0.2 923,357 - +0.5 923,357 - -0.3 923,357 - -0.1 923,361 - -0.1 923,376 - -0.1 923,379 - -0.0 923,379 - +0.3 923,379 - -0.2 923,382 + -0.2 923,392 - +0.8 923,397 + +0.0 923,415 + +0.0 923,422 + -0.8 923,536 - MMP_RS04850 0.20 -0.4 923,536 - MMP_RS04850 0.20 +0.1 923,537 + MMP_RS04850 0.21 -0.6 923,541 - MMP_RS04850 0.21 -0.7 923,542 + MMP_RS04850 0.22 -1.1 923,558 - MMP_RS04850 0.25 -0.9 923,558 - MMP_RS04850 0.25 -2.1 923,558 - MMP_RS04850 0.25 -0.2 923,558 - MMP_RS04850 0.25 -0.8 923,559 + MMP_RS04850 0.25 -0.8 923,559 + MMP_RS04850 0.25 -1.1 923,559 + MMP_RS04850 0.25 -0.9 923,559 + MMP_RS04850 0.25 -0.9 923,559 + MMP_RS04850 0.25 -0.2 923,559 + MMP_RS04850 0.25 -0.3 923,559 + MMP_RS04850 0.25 -1.4 923,559 + MMP_RS04850 0.25 -1.0 923,559 + MMP_RS04850 0.25 -0.4 923,560 - MMP_RS04850 0.25 -1.6 923,560 - MMP_RS04850 0.25 -1.0 923,560 - MMP_RS04850 0.25 +0.1 923,560 - MMP_RS04850 0.25 -0.4 923,560 - MMP_RS04850 0.25 -0.8 923,561 + MMP_RS04850 0.26 -1.1 923,561 + MMP_RS04850 0.26 -0.5 923,561 + MMP_RS04850 0.26 -0.1 923,564 - MMP_RS04850 0.26 -1.3 923,565 + MMP_RS04850 0.26 -0.8 923,565 + MMP_RS04850 0.26 -1.1 923,565 + MMP_RS04850 0.26 -0.9 923,565 + MMP_RS04850 0.26 -1.3 923,565 + MMP_RS04850 0.26 -0.9 923,565 + MMP_RS04850 0.26 -0.8 923,565 + MMP_RS04850 0.26 -0.3 923,612 - MMP_RS04850 0.36 -1.2 923,663 + MMP_RS04850 0.46 -1.1 923,664 - MMP_RS04850 0.46 -0.8 923,665 + MMP_RS04850 0.46 -0.9 923,681 - MMP_RS04850 0.50 -0.8 923,696 - MMP_RS04850 0.53 -1.5 923,733 - MMP_RS04850 0.60 -0.3 923,779 + MMP_RS04850 0.69 -0.1 923,784 + MMP_RS04850 0.70 -0.4 923,791 - MMP_RS04850 0.72 -1.0 923,791 - MMP_RS04850 0.72 -0.9 923,801 + MMP_RS04850 0.74 -0.5 923,801 + MMP_RS04850 0.74 -0.4 923,801 + MMP_RS04850 0.74 -0.8 923,817 - MMP_RS04850 0.77 -2.1 923,818 + MMP_RS04850 0.77 -0.4 923,822 + MMP_RS04850 0.78 -0.4 923,832 + MMP_RS04850 0.80 -0.5 923,849 - MMP_RS04850 0.83 +0.8 923,850 + MMP_RS04850 0.84 -0.4 923,850 + MMP_RS04850 0.84 -1.1 923,850 + MMP_RS04850 0.84 -0.5 923,885 + -0.8 923,885 + -0.5 923,885 + -0.3 923,887 + -1.5 923,887 + +0.7 923,887 + +0.1 923,889 - -2.0 923,890 + -1.0 923,890 + -0.2 923,890 + -0.7 923,890 + -1.1 923,960 + -2.0 924,032 - -1.9 924,091 - -1.5
Or see this region's nucleotide sequence