Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04470 and MMP_RS04475 overlap by 35 nucleotides MMP_RS04475 and MMP_RS04480 are separated by 575 nucleotides MMP_RS04480 and MMP_RS04485 are separated by 0 nucleotides MMP_RS04485 and MMP_RS04490 are separated by 149 nucleotides
MMP_RS04470: MMP_RS04470 - nitrogenase, at 849,999 to 851,375
_RS04470
MMP_RS04475: MMP_RS04475 - nitrogen fixation, at 851,341 to 851,661
_RS04475
MMP_RS04480: MMP_RS04480 - lysine 2 3-aminomutase, at 852,237 to 853,538
_RS04480
MMP_RS04485: MMP_RS04485 - putative beta-lysine N-acetyltransferase, at 853,539 to 854,363
_RS04485
MMP_RS04490: MMP_RS04490 - CBS domain-containing protein, at 854,513 to 854,989
_RS04490
Position (kb) 852
853
854 Strain fitness (log2 ratio) -1
0
1 at 851.239 kb on + strand at 851.240 kb on - strand at 851.241 kb on + strand at 851.260 kb on - strand at 851.261 kb on + strand at 851.264 kb on - strand at 851.264 kb on - strand at 851.264 kb on - strand at 851.267 kb on - strand at 851.268 kb on + strand at 851.268 kb on + strand at 851.269 kb on - strand at 851.269 kb on - strand at 851.276 kb on - strand at 851.293 kb on + strand at 851.382 kb on + strand, within MMP_RS04475 at 851.382 kb on + strand, within MMP_RS04475 at 851.444 kb on - strand, within MMP_RS04475 at 851.484 kb on - strand, within MMP_RS04475 at 851.486 kb on - strand, within MMP_RS04475 at 851.513 kb on + strand, within MMP_RS04475 at 851.934 kb on - strand at 851.944 kb on - strand at 851.945 kb on + strand at 851.957 kb on + strand at 851.966 kb on - strand at 851.971 kb on - strand at 851.972 kb on + strand at 851.975 kb on - strand at 851.976 kb on + strand at 851.976 kb on + strand at 851.976 kb on + strand at 851.998 kb on - strand at 852.002 kb on - strand at 852.041 kb on - strand at 852.046 kb on - strand at 852.051 kb on - strand at 852.051 kb on - strand at 852.051 kb on - strand at 852.051 kb on - strand at 852.054 kb on + strand at 852.056 kb on - strand at 852.057 kb on + strand at 852.057 kb on + strand at 852.074 kb on + strand at 852.102 kb on - strand at 852.102 kb on - strand at 852.103 kb on + strand at 852.105 kb on + strand at 852.179 kb on - strand at 852.180 kb on + strand at 852.247 kb on - strand at 852.248 kb on + strand at 852.260 kb on - strand at 852.265 kb on - strand at 852.319 kb on + strand at 852.421 kb on - strand, within MMP_RS04480 at 852.422 kb on + strand, within MMP_RS04480 at 852.428 kb on + strand, within MMP_RS04480 at 852.428 kb on + strand, within MMP_RS04480 at 852.443 kb on - strand, within MMP_RS04480 at 852.451 kb on + strand, within MMP_RS04480 at 852.453 kb on - strand, within MMP_RS04480 at 852.454 kb on + strand, within MMP_RS04480 at 852.454 kb on + strand, within MMP_RS04480 at 852.454 kb on + strand, within MMP_RS04480 at 852.463 kb on - strand, within MMP_RS04480 at 852.500 kb on - strand, within MMP_RS04480 at 852.533 kb on + strand, within MMP_RS04480 at 852.533 kb on + strand, within MMP_RS04480 at 852.622 kb on - strand, within MMP_RS04480 at 852.627 kb on - strand, within MMP_RS04480 at 852.632 kb on + strand, within MMP_RS04480 at 852.741 kb on + strand, within MMP_RS04480 at 852.752 kb on - strand, within MMP_RS04480 at 852.753 kb on + strand, within MMP_RS04480 at 852.757 kb on - strand, within MMP_RS04480 at 852.812 kb on + strand, within MMP_RS04480 at 852.840 kb on + strand, within MMP_RS04480 at 852.858 kb on + strand, within MMP_RS04480 at 852.953 kb on - strand, within MMP_RS04480 at 852.953 kb on - strand, within MMP_RS04480 at 852.954 kb on + strand, within MMP_RS04480 at 853.077 kb on - strand, within MMP_RS04480 at 853.077 kb on - strand, within MMP_RS04480 at 853.078 kb on + strand, within MMP_RS04480 at 853.129 kb on + strand, within MMP_RS04480 at 853.131 kb on - strand, within MMP_RS04480 at 853.131 kb on - strand, within MMP_RS04480 at 853.132 kb on + strand, within MMP_RS04480 at 853.214 kb on + strand, within MMP_RS04480 at 853.245 kb on + strand, within MMP_RS04480 at 853.248 kb on - strand, within MMP_RS04480 at 853.248 kb on - strand, within MMP_RS04480 at 853.249 kb on + strand, within MMP_RS04480 at 853.255 kb on - strand, within MMP_RS04480 at 853.299 kb on - strand, within MMP_RS04480 at 853.300 kb on + strand, within MMP_RS04480 at 853.362 kb on - strand, within MMP_RS04480 at 853.478 kb on + strand at 853.495 kb on - strand at 853.495 kb on - strand at 853.496 kb on + strand at 853.580 kb on + strand at 853.600 kb on - strand at 853.601 kb on + strand at 853.601 kb on + strand at 853.601 kb on + strand at 853.602 kb on - strand at 853.602 kb on - strand at 853.603 kb on + strand at 853.604 kb on - strand at 853.605 kb on + strand at 853.735 kb on + strand, within MMP_RS04485 at 853.782 kb on - strand, within MMP_RS04485 at 853.783 kb on + strand, within MMP_RS04485 at 853.787 kb on - strand, within MMP_RS04485 at 853.788 kb on + strand, within MMP_RS04485 at 853.788 kb on + strand, within MMP_RS04485 at 853.945 kb on - strand, within MMP_RS04485 at 853.945 kb on - strand, within MMP_RS04485 at 854.007 kb on + strand, within MMP_RS04485 at 854.007 kb on + strand, within MMP_RS04485 at 854.008 kb on - strand, within MMP_RS04485 at 854.009 kb on + strand, within MMP_RS04485 at 854.011 kb on - strand, within MMP_RS04485 at 854.032 kb on - strand, within MMP_RS04485 at 854.097 kb on + strand, within MMP_RS04485 at 854.097 kb on + strand, within MMP_RS04485 at 854.167 kb on + strand, within MMP_RS04485 at 854.175 kb on - strand, within MMP_RS04485 at 854.177 kb on - strand, within MMP_RS04485 at 854.178 kb on + strand, within MMP_RS04485 at 854.178 kb on + strand, within MMP_RS04485 at 854.178 kb on + strand, within MMP_RS04485 at 854.178 kb on + strand, within MMP_RS04485 at 854.178 kb on + strand, within MMP_RS04485 at 854.279 kb on - strand, within MMP_RS04485 at 854.303 kb on - strand at 854.306 kb on - strand at 854.306 kb on - strand at 854.346 kb on - strand at 854.425 kb on + strand at 854.428 kb on - strand at 854.428 kb on - strand at 854.428 kb on - strand at 854.428 kb on - strand at 854.429 kb on + strand at 854.429 kb on + strand at 854.429 kb on + strand at 854.429 kb on + strand at 854.429 kb on + strand at 854.429 kb on + strand at 854.430 kb on - strand at 854.431 kb on + strand at 854.431 kb on + strand at 854.481 kb on - strand at 854.486 kb on - strand at 854.492 kb on + strand at 854.492 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 851,239 + +0.4 851,240 - +0.1 851,241 + -0.8 851,260 - -0.4 851,261 + -0.1 851,264 - -0.1 851,264 - -0.2 851,264 - -0.5 851,267 - +0.0 851,268 + -0.2 851,268 + +0.6 851,269 - -0.2 851,269 - +0.1 851,276 - +0.1 851,293 + +0.1 851,382 + MMP_RS04475 0.13 +0.1 851,382 + MMP_RS04475 0.13 +0.1 851,444 - MMP_RS04475 0.32 -0.4 851,484 - MMP_RS04475 0.45 +0.1 851,486 - MMP_RS04475 0.45 -0.6 851,513 + MMP_RS04475 0.54 -0.3 851,934 - +0.3 851,944 - +0.1 851,945 + +0.3 851,957 + +0.0 851,966 - -0.3 851,971 - +0.6 851,972 + +0.0 851,975 - -0.6 851,976 + -0.0 851,976 + +0.0 851,976 + -0.1 851,998 - +0.2 852,002 - -0.3 852,041 - +0.2 852,046 - -0.4 852,051 - -0.2 852,051 - +0.5 852,051 - +0.1 852,051 - +0.1 852,054 + +0.0 852,056 - +0.1 852,057 + -0.2 852,057 + +0.3 852,074 + +0.3 852,102 - +0.1 852,102 - +0.2 852,103 + +0.6 852,105 + +0.8 852,179 - -0.3 852,180 + +0.1 852,247 - -0.0 852,248 + +0.5 852,260 - +0.4 852,265 - +0.6 852,319 + -0.1 852,421 - MMP_RS04480 0.14 +0.6 852,422 + MMP_RS04480 0.14 +0.0 852,428 + MMP_RS04480 0.15 +0.1 852,428 + MMP_RS04480 0.15 +0.3 852,443 - MMP_RS04480 0.16 +0.7 852,451 + MMP_RS04480 0.16 +0.3 852,453 - MMP_RS04480 0.17 +0.3 852,454 + MMP_RS04480 0.17 -0.2 852,454 + MMP_RS04480 0.17 +0.4 852,454 + MMP_RS04480 0.17 +0.3 852,463 - MMP_RS04480 0.17 +0.5 852,500 - MMP_RS04480 0.20 -0.1 852,533 + MMP_RS04480 0.23 +0.2 852,533 + MMP_RS04480 0.23 +0.3 852,622 - MMP_RS04480 0.30 -0.4 852,627 - MMP_RS04480 0.30 +0.2 852,632 + MMP_RS04480 0.30 +0.1 852,741 + MMP_RS04480 0.39 +0.1 852,752 - MMP_RS04480 0.40 +0.5 852,753 + MMP_RS04480 0.40 +0.0 852,757 - MMP_RS04480 0.40 +0.4 852,812 + MMP_RS04480 0.44 +0.3 852,840 + MMP_RS04480 0.46 +0.3 852,858 + MMP_RS04480 0.48 +0.3 852,953 - MMP_RS04480 0.55 +0.4 852,953 - MMP_RS04480 0.55 +0.0 852,954 + MMP_RS04480 0.55 +0.1 853,077 - MMP_RS04480 0.65 +0.4 853,077 - MMP_RS04480 0.65 +0.4 853,078 + MMP_RS04480 0.65 +0.1 853,129 + MMP_RS04480 0.69 +0.3 853,131 - MMP_RS04480 0.69 +0.3 853,131 - MMP_RS04480 0.69 +0.7 853,132 + MMP_RS04480 0.69 +0.1 853,214 + MMP_RS04480 0.75 +0.4 853,245 + MMP_RS04480 0.77 +0.5 853,248 - MMP_RS04480 0.78 -0.2 853,248 - MMP_RS04480 0.78 +0.1 853,249 + MMP_RS04480 0.78 -0.1 853,255 - MMP_RS04480 0.78 -0.0 853,299 - MMP_RS04480 0.82 +0.5 853,300 + MMP_RS04480 0.82 +0.3 853,362 - MMP_RS04480 0.86 -0.3 853,478 + +0.2 853,495 - -1.0 853,495 - +0.4 853,496 + +0.0 853,580 + +0.2 853,600 - +0.0 853,601 + +0.3 853,601 + -0.2 853,601 + -0.1 853,602 - +0.2 853,602 - +0.5 853,603 + -0.2 853,604 - +0.1 853,605 + +1.3 853,735 + MMP_RS04485 0.24 -0.1 853,782 - MMP_RS04485 0.29 +0.1 853,783 + MMP_RS04485 0.30 +0.4 853,787 - MMP_RS04485 0.30 -0.0 853,788 + MMP_RS04485 0.30 -0.1 853,788 + MMP_RS04485 0.30 -0.0 853,945 - MMP_RS04485 0.49 -0.7 853,945 - MMP_RS04485 0.49 -0.2 854,007 + MMP_RS04485 0.57 +0.1 854,007 + MMP_RS04485 0.57 -0.1 854,008 - MMP_RS04485 0.57 -0.1 854,009 + MMP_RS04485 0.57 -0.3 854,011 - MMP_RS04485 0.57 -0.7 854,032 - MMP_RS04485 0.60 -0.2 854,097 + MMP_RS04485 0.68 +0.1 854,097 + MMP_RS04485 0.68 +0.1 854,167 + MMP_RS04485 0.76 +0.3 854,175 - MMP_RS04485 0.77 -0.3 854,177 - MMP_RS04485 0.77 +0.2 854,178 + MMP_RS04485 0.77 -0.0 854,178 + MMP_RS04485 0.77 +0.1 854,178 + MMP_RS04485 0.77 -0.2 854,178 + MMP_RS04485 0.77 -0.1 854,178 + MMP_RS04485 0.77 -0.1 854,279 - MMP_RS04485 0.90 -0.3 854,303 - -0.1 854,306 - -0.3 854,306 - +0.7 854,346 - -0.1 854,425 + -0.1 854,428 - +0.2 854,428 - -0.0 854,428 - +0.0 854,428 - +0.5 854,429 + -0.1 854,429 + +0.3 854,429 + +0.3 854,429 + +0.1 854,429 + +0.4 854,429 + -0.4 854,430 - +0.4 854,431 + -0.4 854,431 + +1.4 854,481 - -0.3 854,486 - -0.4 854,492 + +0.5 854,492 + -0.0
Or see this region's nucleotide sequence