Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04415 and MMP_RS04420 are separated by 254 nucleotides MMP_RS04420 and MMP_RS04425 are separated by 62 nucleotides MMP_RS04425 and MMP_RS04430 are separated by 43 nucleotides MMP_RS04430 and MMP_RS04435 are separated by 27 nucleotides
MMP_RS04415: MMP_RS04415 - peptide-methionine (S)-S-oxide reductase MsrA, at 839,898 to 840,371
_RS04415
MMP_RS04420: MMP_RS04420 - LysE family translocator, at 840,626 to 841,249
_RS04420
MMP_RS04425: MMP_RS04425 - APC family permease, at 841,312 to 842,565
_RS04425
MMP_RS04430: MMP_RS04430 - DUF1847 domain-containing protein, at 842,609 to 843,238
_RS04430
MMP_RS04435: MMP_RS04435 - pyridoxamine 5'-phosphate oxidase family protein, at 843,266 to 843,745
_RS04435
Position (kb) 841
842
843 Strain fitness (log2 ratio) -1
0
1 at 840.360 kb on + strand at 840.362 kb on - strand at 840.392 kb on - strand at 840.393 kb on + strand at 840.422 kb on + strand at 840.458 kb on - strand at 840.463 kb on + strand at 840.463 kb on + strand at 840.485 kb on - strand at 840.486 kb on + strand at 840.487 kb on - strand at 840.489 kb on - strand at 840.490 kb on + strand at 840.490 kb on + strand at 840.501 kb on - strand at 840.502 kb on + strand at 840.502 kb on + strand at 840.510 kb on + strand at 840.520 kb on - strand at 840.582 kb on + strand at 840.590 kb on - strand at 840.590 kb on - strand at 840.590 kb on - strand at 840.590 kb on - strand at 840.591 kb on + strand at 840.595 kb on + strand at 840.599 kb on + strand at 840.637 kb on - strand at 840.650 kb on - strand at 840.676 kb on - strand at 840.676 kb on - strand at 840.677 kb on + strand at 840.677 kb on + strand at 840.699 kb on - strand, within MMP_RS04420 at 840.791 kb on + strand, within MMP_RS04420 at 840.937 kb on - strand, within MMP_RS04420 at 841.071 kb on - strand, within MMP_RS04420 at 841.155 kb on - strand, within MMP_RS04420 at 841.182 kb on + strand, within MMP_RS04420 at 841.300 kb on + strand at 841.311 kb on - strand at 841.311 kb on - strand at 841.311 kb on - strand at 841.337 kb on + strand at 841.338 kb on - strand at 841.338 kb on - strand at 841.339 kb on + strand at 841.339 kb on + strand at 841.343 kb on - strand at 841.344 kb on + strand at 841.353 kb on - strand at 841.388 kb on - strand at 841.389 kb on + strand at 841.401 kb on + strand at 841.401 kb on + strand at 841.405 kb on - strand at 841.411 kb on + strand at 841.490 kb on - strand, within MMP_RS04425 at 841.490 kb on - strand, within MMP_RS04425 at 841.532 kb on - strand, within MMP_RS04425 at 841.533 kb on + strand, within MMP_RS04425 at 841.573 kb on - strand, within MMP_RS04425 at 841.574 kb on + strand, within MMP_RS04425 at 841.576 kb on - strand, within MMP_RS04425 at 841.576 kb on - strand, within MMP_RS04425 at 841.577 kb on + strand, within MMP_RS04425 at 841.577 kb on + strand, within MMP_RS04425 at 841.577 kb on + strand, within MMP_RS04425 at 841.581 kb on + strand, within MMP_RS04425 at 841.581 kb on + strand, within MMP_RS04425 at 841.583 kb on - strand, within MMP_RS04425 at 841.584 kb on + strand, within MMP_RS04425 at 841.647 kb on + strand, within MMP_RS04425 at 841.678 kb on - strand, within MMP_RS04425 at 841.679 kb on + strand, within MMP_RS04425 at 841.692 kb on + strand, within MMP_RS04425 at 841.709 kb on - strand, within MMP_RS04425 at 841.736 kb on - strand, within MMP_RS04425 at 841.767 kb on + strand, within MMP_RS04425 at 841.773 kb on - strand, within MMP_RS04425 at 841.778 kb on - strand, within MMP_RS04425 at 841.785 kb on + strand, within MMP_RS04425 at 841.785 kb on + strand, within MMP_RS04425 at 841.785 kb on + strand, within MMP_RS04425 at 841.847 kb on - strand, within MMP_RS04425 at 841.847 kb on - strand, within MMP_RS04425 at 841.851 kb on - strand, within MMP_RS04425 at 841.862 kb on - strand, within MMP_RS04425 at 841.863 kb on + strand, within MMP_RS04425 at 841.867 kb on - strand, within MMP_RS04425 at 841.897 kb on + strand, within MMP_RS04425 at 841.970 kb on - strand, within MMP_RS04425 at 841.971 kb on + strand, within MMP_RS04425 at 841.973 kb on - strand, within MMP_RS04425 at 841.974 kb on + strand, within MMP_RS04425 at 841.974 kb on + strand, within MMP_RS04425 at 841.980 kb on + strand, within MMP_RS04425 at 841.992 kb on - strand, within MMP_RS04425 at 841.992 kb on - strand, within MMP_RS04425 at 841.993 kb on + strand, within MMP_RS04425 at 841.994 kb on - strand, within MMP_RS04425 at 842.031 kb on + strand, within MMP_RS04425 at 842.054 kb on - strand, within MMP_RS04425 at 842.055 kb on + strand, within MMP_RS04425 at 842.081 kb on - strand, within MMP_RS04425 at 842.081 kb on - strand, within MMP_RS04425 at 842.084 kb on - strand, within MMP_RS04425 at 842.116 kb on + strand, within MMP_RS04425 at 842.116 kb on + strand, within MMP_RS04425 at 842.117 kb on - strand, within MMP_RS04425 at 842.127 kb on - strand, within MMP_RS04425 at 842.130 kb on - strand, within MMP_RS04425 at 842.244 kb on - strand, within MMP_RS04425 at 842.300 kb on - strand, within MMP_RS04425 at 842.311 kb on - strand, within MMP_RS04425 at 842.493 kb on + strand at 842.495 kb on - strand at 842.496 kb on + strand at 842.548 kb on + strand at 842.552 kb on + strand at 842.617 kb on - strand at 842.640 kb on - strand at 842.647 kb on - strand at 842.648 kb on + strand at 842.774 kb on + strand, within MMP_RS04430 at 842.879 kb on - strand, within MMP_RS04430 at 842.950 kb on - strand, within MMP_RS04430 at 842.951 kb on + strand, within MMP_RS04430 at 843.002 kb on - strand, within MMP_RS04430 at 843.011 kb on + strand, within MMP_RS04430 at 843.012 kb on - strand, within MMP_RS04430 at 843.038 kb on + strand, within MMP_RS04430 at 843.094 kb on - strand, within MMP_RS04430 at 843.095 kb on + strand, within MMP_RS04430 at 843.129 kb on + strand, within MMP_RS04430 at 843.302 kb on - strand at 843.386 kb on - strand, within MMP_RS04435 at 843.387 kb on + strand, within MMP_RS04435 at 843.402 kb on + strand, within MMP_RS04435 at 843.416 kb on + strand, within MMP_RS04435 at 843.419 kb on - strand, within MMP_RS04435 at 843.425 kb on - strand, within MMP_RS04435 at 843.426 kb on + strand, within MMP_RS04435 at 843.505 kb on + strand, within MMP_RS04435
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 840,360 + +0.6 840,362 - -0.1 840,392 - -0.1 840,393 + -0.3 840,422 + -0.5 840,458 - -0.1 840,463 + +0.2 840,463 + +0.4 840,485 - -0.0 840,486 + +0.3 840,487 - -0.3 840,489 - -0.0 840,490 + -0.3 840,490 + +0.1 840,501 - -0.2 840,502 + +0.5 840,502 + +0.1 840,510 + +0.1 840,520 - -0.0 840,582 + +0.1 840,590 - -0.2 840,590 - -0.6 840,590 - +0.2 840,590 - +0.6 840,591 + +0.4 840,595 + +0.1 840,599 + -0.1 840,637 - -0.3 840,650 - +0.0 840,676 - -0.4 840,676 - -0.1 840,677 + -0.4 840,677 + +0.1 840,699 - MMP_RS04420 0.12 -0.2 840,791 + MMP_RS04420 0.26 -0.1 840,937 - MMP_RS04420 0.50 -0.1 841,071 - MMP_RS04420 0.71 -0.2 841,155 - MMP_RS04420 0.85 -0.5 841,182 + MMP_RS04420 0.89 +0.3 841,300 + +0.1 841,311 - -0.4 841,311 - +0.2 841,311 - +0.6 841,337 + -0.0 841,338 - -0.1 841,338 - -0.2 841,339 + -0.3 841,339 + +0.6 841,343 - +0.2 841,344 + +0.1 841,353 - -0.6 841,388 - -0.2 841,389 + +0.2 841,401 + +0.4 841,401 + +0.1 841,405 - +0.8 841,411 + +0.2 841,490 - MMP_RS04425 0.14 +0.3 841,490 - MMP_RS04425 0.14 +0.3 841,532 - MMP_RS04425 0.18 +0.2 841,533 + MMP_RS04425 0.18 -0.2 841,573 - MMP_RS04425 0.21 +0.4 841,574 + MMP_RS04425 0.21 +0.2 841,576 - MMP_RS04425 0.21 -0.2 841,576 - MMP_RS04425 0.21 +0.0 841,577 + MMP_RS04425 0.21 +0.1 841,577 + MMP_RS04425 0.21 +0.3 841,577 + MMP_RS04425 0.21 -0.6 841,581 + MMP_RS04425 0.21 +0.1 841,581 + MMP_RS04425 0.21 -0.1 841,583 - MMP_RS04425 0.22 +0.2 841,584 + MMP_RS04425 0.22 +0.0 841,647 + MMP_RS04425 0.27 +0.0 841,678 - MMP_RS04425 0.29 +0.1 841,679 + MMP_RS04425 0.29 +0.0 841,692 + MMP_RS04425 0.30 -0.1 841,709 - MMP_RS04425 0.32 +0.1 841,736 - MMP_RS04425 0.34 +0.1 841,767 + MMP_RS04425 0.36 +0.4 841,773 - MMP_RS04425 0.37 -0.1 841,778 - MMP_RS04425 0.37 -0.4 841,785 + MMP_RS04425 0.38 +0.6 841,785 + MMP_RS04425 0.38 -0.1 841,785 + MMP_RS04425 0.38 -0.1 841,847 - MMP_RS04425 0.43 -0.0 841,847 - MMP_RS04425 0.43 -0.2 841,851 - MMP_RS04425 0.43 +0.1 841,862 - MMP_RS04425 0.44 -0.2 841,863 + MMP_RS04425 0.44 -0.5 841,867 - MMP_RS04425 0.44 -0.2 841,897 + MMP_RS04425 0.47 -0.3 841,970 - MMP_RS04425 0.52 +0.0 841,971 + MMP_RS04425 0.53 -0.0 841,973 - MMP_RS04425 0.53 -0.2 841,974 + MMP_RS04425 0.53 +0.4 841,974 + MMP_RS04425 0.53 +0.1 841,980 + MMP_RS04425 0.53 +0.1 841,992 - MMP_RS04425 0.54 -0.0 841,992 - MMP_RS04425 0.54 -0.1 841,993 + MMP_RS04425 0.54 -0.0 841,994 - MMP_RS04425 0.54 +0.2 842,031 + MMP_RS04425 0.57 -0.4 842,054 - MMP_RS04425 0.59 -0.1 842,055 + MMP_RS04425 0.59 -0.0 842,081 - MMP_RS04425 0.61 +0.4 842,081 - MMP_RS04425 0.61 +0.0 842,084 - MMP_RS04425 0.62 -0.4 842,116 + MMP_RS04425 0.64 -0.5 842,116 + MMP_RS04425 0.64 +0.4 842,117 - MMP_RS04425 0.64 +0.4 842,127 - MMP_RS04425 0.65 -0.0 842,130 - MMP_RS04425 0.65 +0.5 842,244 - MMP_RS04425 0.74 +0.1 842,300 - MMP_RS04425 0.79 +0.1 842,311 - MMP_RS04425 0.80 +0.1 842,493 + -0.0 842,495 - -0.0 842,496 + -0.4 842,548 + +0.3 842,552 + -0.2 842,617 - +0.2 842,640 - -0.0 842,647 - +0.4 842,648 + +0.3 842,774 + MMP_RS04430 0.26 +0.2 842,879 - MMP_RS04430 0.43 -0.2 842,950 - MMP_RS04430 0.54 +0.0 842,951 + MMP_RS04430 0.54 +0.3 843,002 - MMP_RS04430 0.62 -0.3 843,011 + MMP_RS04430 0.64 +1.3 843,012 - MMP_RS04430 0.64 -0.2 843,038 + MMP_RS04430 0.68 -0.3 843,094 - MMP_RS04430 0.77 +0.1 843,095 + MMP_RS04430 0.77 -0.2 843,129 + MMP_RS04430 0.83 +0.5 843,302 - +0.1 843,386 - MMP_RS04435 0.25 +0.0 843,387 + MMP_RS04435 0.25 -0.3 843,402 + MMP_RS04435 0.28 -0.3 843,416 + MMP_RS04435 0.31 +0.0 843,419 - MMP_RS04435 0.32 +0.3 843,425 - MMP_RS04435 0.33 +0.3 843,426 + MMP_RS04435 0.33 +0.3 843,505 + MMP_RS04435 0.50 -0.2
Or see this region's nucleotide sequence