Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04365 and MMP_RS04370 are separated by 11 nucleotides MMP_RS04370 and MMP_RS04375 are separated by 66 nucleotides MMP_RS04375 and MMP_RS04380 are separated by 664 nucleotides
MMP_RS04365: MMP_RS04365 - M48 family metallopeptidase, at 833,339 to 834,007
_RS04365
MMP_RS04370: MMP_RS04370 - hypothetical protein, at 834,019 to 834,489
_RS04370
MMP_RS04375: MMP_RS04375 - TetR/AcrR family transcriptional regulator, at 834,556 to 835,146
_RS04375
MMP_RS04380: MMP_RS04380 - DUF4013 domain-containing protein, at 835,811 to 836,656
_RS04380
Position (kb) 834
835
836 Strain fitness (log2 ratio) -1
0
1 at 833.557 kb on + strand, within MMP_RS04365 at 833.565 kb on + strand, within MMP_RS04365 at 833.568 kb on - strand, within MMP_RS04365 at 833.579 kb on - strand, within MMP_RS04365 at 833.582 kb on + strand, within MMP_RS04365 at 833.592 kb on - strand, within MMP_RS04365 at 833.592 kb on - strand, within MMP_RS04365 at 833.593 kb on + strand, within MMP_RS04365 at 833.616 kb on - strand, within MMP_RS04365 at 833.616 kb on - strand, within MMP_RS04365 at 833.617 kb on + strand, within MMP_RS04365 at 833.645 kb on - strand, within MMP_RS04365 at 833.646 kb on + strand, within MMP_RS04365 at 833.646 kb on + strand, within MMP_RS04365 at 833.737 kb on - strand, within MMP_RS04365 at 833.842 kb on + strand, within MMP_RS04365 at 833.875 kb on - strand, within MMP_RS04365 at 833.886 kb on - strand, within MMP_RS04365 at 833.887 kb on + strand, within MMP_RS04365 at 833.887 kb on + strand, within MMP_RS04365 at 833.887 kb on + strand, within MMP_RS04365 at 833.910 kb on - strand, within MMP_RS04365 at 834.005 kb on - strand at 834.020 kb on - strand at 834.028 kb on - strand at 834.029 kb on + strand at 834.029 kb on + strand at 834.029 kb on + strand at 834.029 kb on + strand at 834.029 kb on + strand at 834.031 kb on + strand at 834.033 kb on - strand at 834.101 kb on - strand, within MMP_RS04370 at 834.101 kb on - strand, within MMP_RS04370 at 834.110 kb on + strand, within MMP_RS04370 at 834.130 kb on - strand, within MMP_RS04370 at 834.130 kb on - strand, within MMP_RS04370 at 834.131 kb on + strand, within MMP_RS04370 at 834.131 kb on + strand, within MMP_RS04370 at 834.131 kb on + strand, within MMP_RS04370 at 834.132 kb on - strand, within MMP_RS04370 at 834.132 kb on - strand, within MMP_RS04370 at 834.133 kb on + strand, within MMP_RS04370 at 834.133 kb on + strand, within MMP_RS04370 at 834.150 kb on - strand, within MMP_RS04370 at 834.160 kb on - strand, within MMP_RS04370 at 834.160 kb on - strand, within MMP_RS04370 at 834.161 kb on + strand, within MMP_RS04370 at 834.161 kb on + strand, within MMP_RS04370 at 834.166 kb on + strand, within MMP_RS04370 at 834.166 kb on + strand, within MMP_RS04370 at 834.168 kb on + strand, within MMP_RS04370 at 834.186 kb on - strand, within MMP_RS04370 at 834.187 kb on + strand, within MMP_RS04370 at 834.212 kb on - strand, within MMP_RS04370 at 834.264 kb on - strand, within MMP_RS04370 at 834.264 kb on - strand, within MMP_RS04370 at 834.322 kb on - strand, within MMP_RS04370 at 834.322 kb on - strand, within MMP_RS04370 at 834.322 kb on - strand, within MMP_RS04370 at 834.323 kb on + strand, within MMP_RS04370 at 834.333 kb on - strand, within MMP_RS04370 at 834.339 kb on - strand, within MMP_RS04370 at 834.378 kb on - strand, within MMP_RS04370 at 834.426 kb on - strand, within MMP_RS04370 at 834.426 kb on - strand, within MMP_RS04370 at 834.426 kb on - strand, within MMP_RS04370 at 834.427 kb on + strand, within MMP_RS04370 at 834.427 kb on + strand, within MMP_RS04370 at 834.427 kb on + strand, within MMP_RS04370 at 834.431 kb on + strand, within MMP_RS04370 at 834.440 kb on - strand, within MMP_RS04370 at 834.478 kb on - strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.479 kb on + strand at 834.567 kb on - strand at 834.570 kb on - strand at 834.570 kb on - strand at 834.725 kb on + strand, within MMP_RS04375 at 834.727 kb on - strand, within MMP_RS04375 at 834.728 kb on + strand, within MMP_RS04375 at 834.729 kb on - strand, within MMP_RS04375 at 834.730 kb on + strand, within MMP_RS04375 at 834.730 kb on + strand, within MMP_RS04375 at 834.740 kb on + strand, within MMP_RS04375 at 834.751 kb on - strand, within MMP_RS04375 at 834.751 kb on - strand, within MMP_RS04375 at 834.764 kb on - strand, within MMP_RS04375 at 834.765 kb on + strand, within MMP_RS04375 at 834.765 kb on + strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.766 kb on - strand, within MMP_RS04375 at 834.767 kb on + strand, within MMP_RS04375 at 834.767 kb on + strand, within MMP_RS04375 at 834.767 kb on + strand, within MMP_RS04375 at 834.767 kb on + strand, within MMP_RS04375 at 834.767 kb on + strand, within MMP_RS04375 at 834.767 kb on + strand, within MMP_RS04375 at 834.768 kb on - strand at 834.768 kb on - strand, within MMP_RS04375 at 834.768 kb on - strand, within MMP_RS04375 at 834.768 kb on - strand, within MMP_RS04375 at 834.768 kb on - strand, within MMP_RS04375 at 834.769 kb on + strand, within MMP_RS04375 at 834.769 kb on + strand, within MMP_RS04375 at 834.769 kb on + strand, within MMP_RS04375 at 834.774 kb on - strand, within MMP_RS04375 at 834.778 kb on - strand, within MMP_RS04375 at 834.787 kb on - strand, within MMP_RS04375 at 834.830 kb on - strand, within MMP_RS04375 at 834.830 kb on - strand, within MMP_RS04375 at 834.830 kb on - strand, within MMP_RS04375 at 834.830 kb on - strand, within MMP_RS04375 at 834.857 kb on - strand, within MMP_RS04375 at 834.869 kb on - strand, within MMP_RS04375 at 834.870 kb on + strand, within MMP_RS04375 at 834.870 kb on + strand, within MMP_RS04375 at 834.895 kb on + strand, within MMP_RS04375 at 834.928 kb on - strand, within MMP_RS04375 at 834.929 kb on + strand, within MMP_RS04375 at 834.949 kb on - strand, within MMP_RS04375 at 834.949 kb on - strand, within MMP_RS04375 at 834.949 kb on - strand, within MMP_RS04375 at 835.000 kb on - strand, within MMP_RS04375 at 835.001 kb on + strand, within MMP_RS04375 at 835.088 kb on - strand at 835.106 kb on + strand at 835.106 kb on + strand at 835.106 kb on + strand at 835.140 kb on - strand at 835.151 kb on - strand at 835.152 kb on + strand at 835.154 kb on + strand at 835.176 kb on - strand at 835.176 kb on - strand at 835.177 kb on + strand at 835.179 kb on - strand at 835.179 kb on - strand at 835.180 kb on + strand at 835.201 kb on - strand at 835.201 kb on - strand at 835.201 kb on - strand at 835.201 kb on - strand at 835.201 kb on - strand at 835.201 kb on - strand at 835.202 kb on + strand at 835.202 kb on + strand at 835.202 kb on + strand at 835.243 kb on - strand at 835.243 kb on - strand at 835.243 kb on - strand at 835.243 kb on - strand at 835.245 kb on - strand at 835.245 kb on - strand at 835.245 kb on - strand at 835.246 kb on + strand at 835.246 kb on + strand at 835.247 kb on - strand at 835.247 kb on - strand at 835.247 kb on - strand at 835.262 kb on - strand at 835.262 kb on - strand at 835.262 kb on - strand at 835.266 kb on - strand at 835.267 kb on + strand at 835.267 kb on + strand at 835.321 kb on + strand at 835.325 kb on - strand at 835.344 kb on - strand at 835.350 kb on - strand at 835.401 kb on - strand at 835.401 kb on - strand at 835.402 kb on + strand at 835.406 kb on - strand at 835.413 kb on - strand at 835.413 kb on - strand at 835.414 kb on + strand at 835.448 kb on + strand at 835.452 kb on - strand at 835.453 kb on + strand at 835.453 kb on + strand at 835.453 kb on + strand at 835.453 kb on + strand at 835.453 kb on + strand at 835.453 kb on + strand at 835.454 kb on - strand at 835.454 kb on - strand at 835.454 kb on - strand at 835.454 kb on - strand at 835.454 kb on - strand at 835.455 kb on + strand at 835.455 kb on + strand at 835.455 kb on + strand at 835.455 kb on + strand at 835.455 kb on + strand at 835.455 kb on + strand at 835.456 kb on - strand at 835.456 kb on - strand at 835.456 kb on - strand at 835.456 kb on - strand at 835.456 kb on - strand at 835.456 kb on - strand at 835.457 kb on + strand at 835.457 kb on + strand at 835.457 kb on + strand at 835.457 kb on + strand at 835.457 kb on + strand at 835.457 kb on + strand at 835.457 kb on + strand at 835.457 kb on + strand at 835.459 kb on - strand at 835.497 kb on - strand at 835.497 kb on - strand at 835.497 kb on - strand at 835.497 kb on - strand at 835.498 kb on + strand at 835.527 kb on + strand at 835.546 kb on + strand at 835.579 kb on + strand at 835.601 kb on + strand at 835.612 kb on - strand at 835.634 kb on - strand at 835.634 kb on - strand at 835.637 kb on - strand at 835.640 kb on - strand at 835.640 kb on - strand at 835.640 kb on - strand at 835.641 kb on + strand at 835.641 kb on + strand at 835.642 kb on - strand at 835.642 kb on - strand at 835.643 kb on + strand at 835.643 kb on + strand at 835.643 kb on + strand at 835.643 kb on + strand at 835.738 kb on - strand at 835.763 kb on + strand at 835.780 kb on + strand at 835.789 kb on - strand at 835.789 kb on - strand at 835.789 kb on - strand at 835.789 kb on - strand at 835.790 kb on + strand at 835.790 kb on + strand at 835.790 kb on + strand at 835.790 kb on + strand at 835.790 kb on + strand at 835.790 kb on + strand at 835.842 kb on - strand at 835.893 kb on + strand at 835.899 kb on - strand, within MMP_RS04380 at 835.915 kb on - strand, within MMP_RS04380 at 835.968 kb on - strand, within MMP_RS04380 at 835.968 kb on - strand, within MMP_RS04380 at 835.969 kb on + strand, within MMP_RS04380 at 835.969 kb on + strand, within MMP_RS04380 at 835.969 kb on + strand, within MMP_RS04380 at 836.005 kb on + strand, within MMP_RS04380 at 836.062 kb on - strand, within MMP_RS04380 at 836.063 kb on + strand, within MMP_RS04380 at 836.063 kb on + strand, within MMP_RS04380 at 836.065 kb on + strand, within MMP_RS04380 at 836.067 kb on - strand, within MMP_RS04380
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 833,557 + MMP_RS04365 0.33 -0.1 833,565 + MMP_RS04365 0.34 -0.2 833,568 - MMP_RS04365 0.34 +0.3 833,579 - MMP_RS04365 0.36 +0.2 833,582 + MMP_RS04365 0.36 +0.2 833,592 - MMP_RS04365 0.38 +0.2 833,592 - MMP_RS04365 0.38 +0.0 833,593 + MMP_RS04365 0.38 -0.2 833,616 - MMP_RS04365 0.41 +0.1 833,616 - MMP_RS04365 0.41 +0.2 833,617 + MMP_RS04365 0.42 -0.0 833,645 - MMP_RS04365 0.46 -0.5 833,646 + MMP_RS04365 0.46 +0.1 833,646 + MMP_RS04365 0.46 +0.3 833,737 - MMP_RS04365 0.59 +0.4 833,842 + MMP_RS04365 0.75 -0.2 833,875 - MMP_RS04365 0.80 -0.7 833,886 - MMP_RS04365 0.82 +0.1 833,887 + MMP_RS04365 0.82 -0.0 833,887 + MMP_RS04365 0.82 +0.5 833,887 + MMP_RS04365 0.82 +0.5 833,910 - MMP_RS04365 0.85 +0.1 834,005 - +0.5 834,020 - +0.2 834,028 - -0.5 834,029 + +0.2 834,029 + -0.2 834,029 + +0.2 834,029 + +0.3 834,029 + +0.6 834,031 + -0.1 834,033 - +0.0 834,101 - MMP_RS04370 0.17 +0.4 834,101 - MMP_RS04370 0.17 -0.3 834,110 + MMP_RS04370 0.19 +0.3 834,130 - MMP_RS04370 0.24 -0.1 834,130 - MMP_RS04370 0.24 +0.2 834,131 + MMP_RS04370 0.24 +0.5 834,131 + MMP_RS04370 0.24 -0.1 834,131 + MMP_RS04370 0.24 -0.4 834,132 - MMP_RS04370 0.24 +1.0 834,132 - MMP_RS04370 0.24 -0.1 834,133 + MMP_RS04370 0.24 -0.8 834,133 + MMP_RS04370 0.24 -0.0 834,150 - MMP_RS04370 0.28 -0.3 834,160 - MMP_RS04370 0.30 +0.3 834,160 - MMP_RS04370 0.30 -0.2 834,161 + MMP_RS04370 0.30 -0.1 834,161 + MMP_RS04370 0.30 -0.0 834,166 + MMP_RS04370 0.31 -0.1 834,166 + MMP_RS04370 0.31 -0.2 834,168 + MMP_RS04370 0.32 +0.2 834,186 - MMP_RS04370 0.35 +0.2 834,187 + MMP_RS04370 0.36 +0.2 834,212 - MMP_RS04370 0.41 -0.2 834,264 - MMP_RS04370 0.52 -0.4 834,264 - MMP_RS04370 0.52 -0.1 834,322 - MMP_RS04370 0.64 +0.1 834,322 - MMP_RS04370 0.64 -0.4 834,322 - MMP_RS04370 0.64 +0.3 834,323 + MMP_RS04370 0.65 +0.4 834,333 - MMP_RS04370 0.67 +0.3 834,339 - MMP_RS04370 0.68 -0.1 834,378 - MMP_RS04370 0.76 -0.1 834,426 - MMP_RS04370 0.86 -0.5 834,426 - MMP_RS04370 0.86 +0.3 834,426 - MMP_RS04370 0.86 +0.5 834,427 + MMP_RS04370 0.87 -0.7 834,427 + MMP_RS04370 0.87 +0.3 834,427 + MMP_RS04370 0.87 +0.3 834,431 + MMP_RS04370 0.87 -0.1 834,440 - MMP_RS04370 0.89 +0.0 834,478 - +0.1 834,479 + -0.2 834,479 + -0.0 834,479 + -0.6 834,567 - -0.0 834,570 - -0.8 834,570 - +0.4 834,725 + MMP_RS04375 0.29 -0.4 834,727 - MMP_RS04375 0.29 -0.3 834,728 + MMP_RS04375 0.29 +0.1 834,729 - MMP_RS04375 0.29 +0.3 834,730 + MMP_RS04375 0.29 -1.6 834,730 + MMP_RS04375 0.29 +0.0 834,740 + MMP_RS04375 0.31 +0.3 834,751 - MMP_RS04375 0.33 -0.1 834,751 - MMP_RS04375 0.33 -0.2 834,764 - MMP_RS04375 0.35 +0.2 834,765 + MMP_RS04375 0.35 +0.7 834,765 + MMP_RS04375 0.35 +0.2 834,766 - MMP_RS04375 0.36 -0.4 834,766 - MMP_RS04375 0.36 -0.5 834,766 - MMP_RS04375 0.36 +0.1 834,766 - MMP_RS04375 0.36 -0.2 834,766 - MMP_RS04375 0.36 -0.0 834,766 - MMP_RS04375 0.36 +0.1 834,766 - MMP_RS04375 0.36 -0.2 834,766 - MMP_RS04375 0.36 +0.3 834,767 + MMP_RS04375 0.36 -0.3 834,767 + MMP_RS04375 0.36 -0.1 834,767 + MMP_RS04375 0.36 -0.1 834,767 + MMP_RS04375 0.36 +0.0 834,767 + MMP_RS04375 0.36 -0.3 834,767 + MMP_RS04375 0.36 +0.3 834,768 - -1.0 834,768 - MMP_RS04375 0.36 +0.1 834,768 - MMP_RS04375 0.36 +0.2 834,768 - MMP_RS04375 0.36 +0.3 834,768 - MMP_RS04375 0.36 +1.5 834,769 + MMP_RS04375 0.36 -0.1 834,769 + MMP_RS04375 0.36 -0.1 834,769 + MMP_RS04375 0.36 +0.2 834,774 - MMP_RS04375 0.37 -0.2 834,778 - MMP_RS04375 0.38 -0.0 834,787 - MMP_RS04375 0.39 -0.2 834,830 - MMP_RS04375 0.46 -0.1 834,830 - MMP_RS04375 0.46 +0.5 834,830 - MMP_RS04375 0.46 +0.0 834,830 - MMP_RS04375 0.46 +0.1 834,857 - MMP_RS04375 0.51 +0.1 834,869 - MMP_RS04375 0.53 -0.1 834,870 + MMP_RS04375 0.53 -0.2 834,870 + MMP_RS04375 0.53 +0.1 834,895 + MMP_RS04375 0.57 +0.3 834,928 - MMP_RS04375 0.63 -0.6 834,929 + MMP_RS04375 0.63 +0.2 834,949 - MMP_RS04375 0.66 -0.0 834,949 - MMP_RS04375 0.66 +0.1 834,949 - MMP_RS04375 0.66 +0.6 835,000 - MMP_RS04375 0.75 -0.0 835,001 + MMP_RS04375 0.75 -0.3 835,088 - -1.3 835,106 + -0.2 835,106 + +0.3 835,106 + -0.1 835,140 - -0.1 835,151 - +0.1 835,152 + -0.2 835,154 + +0.2 835,176 - +0.5 835,176 - -0.2 835,177 + +0.4 835,179 - -0.1 835,179 - +0.4 835,180 + -0.3 835,201 - +0.3 835,201 - -0.3 835,201 - +0.0 835,201 - -0.0 835,201 - -0.7 835,201 - -0.2 835,202 + -0.0 835,202 + +0.2 835,202 + +0.2 835,243 - +0.1 835,243 - +0.3 835,243 - +0.0 835,243 - +0.2 835,245 - -0.3 835,245 - -0.2 835,245 - -0.2 835,246 + -0.2 835,246 + -0.2 835,247 - -0.1 835,247 - +0.1 835,247 - +0.1 835,262 - -0.1 835,262 - -0.1 835,262 - -0.3 835,266 - +0.6 835,267 + -0.4 835,267 + -0.5 835,321 + +0.4 835,325 - +0.1 835,344 - -0.0 835,350 - +0.0 835,401 - -0.6 835,401 - -0.2 835,402 + +0.1 835,406 - -0.8 835,413 - -0.3 835,413 - +0.0 835,414 + -0.0 835,448 + -0.4 835,452 - +0.3 835,453 + +0.0 835,453 + -0.1 835,453 + -0.6 835,453 + +0.5 835,453 + +0.0 835,453 + +0.4 835,454 - +0.1 835,454 - -0.3 835,454 - +0.2 835,454 - -0.1 835,454 - +1.0 835,455 + -0.1 835,455 + -0.7 835,455 + -0.2 835,455 + +0.2 835,455 + +1.2 835,455 + +0.1 835,456 - +0.1 835,456 - +0.2 835,456 - -0.0 835,456 - -0.4 835,456 - +0.2 835,456 - +0.7 835,457 + +0.4 835,457 + +0.0 835,457 + +0.1 835,457 + +1.1 835,457 + +0.5 835,457 + -0.1 835,457 + -0.6 835,457 + +0.3 835,459 - -0.1 835,497 - -0.0 835,497 - -0.4 835,497 - -0.4 835,497 - -0.1 835,498 + +0.7 835,527 + +0.1 835,546 + -1.0 835,579 + -0.2 835,601 + -0.6 835,612 - -0.4 835,634 - -0.2 835,634 - -0.1 835,637 - -0.2 835,640 - +0.1 835,640 - +0.9 835,640 - +0.0 835,641 + -0.4 835,641 + -0.4 835,642 - -0.5 835,642 - +0.4 835,643 + -0.1 835,643 + +0.5 835,643 + +0.2 835,643 + +0.1 835,738 - -0.5 835,763 + +0.4 835,780 + +0.4 835,789 - -0.0 835,789 - -0.2 835,789 - +0.1 835,789 - +0.1 835,790 + +0.3 835,790 + +0.3 835,790 + -0.2 835,790 + -0.2 835,790 + +0.0 835,790 + +0.1 835,842 - -0.1 835,893 + -0.4 835,899 - MMP_RS04380 0.10 +0.5 835,915 - MMP_RS04380 0.12 +0.2 835,968 - MMP_RS04380 0.19 +0.2 835,968 - MMP_RS04380 0.19 +0.0 835,969 + MMP_RS04380 0.19 -0.1 835,969 + MMP_RS04380 0.19 -0.3 835,969 + MMP_RS04380 0.19 +0.2 836,005 + MMP_RS04380 0.23 +0.2 836,062 - MMP_RS04380 0.30 -0.3 836,063 + MMP_RS04380 0.30 -0.3 836,063 + MMP_RS04380 0.30 +0.1 836,065 + MMP_RS04380 0.30 +0.1 836,067 - MMP_RS04380 0.30 -0.3
Or see this region's nucleotide sequence