Experiment: Formate McCas no stress control 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMP_RS04115 and MMP_RS04120 are separated by 373 nucleotides MMP_RS04120 and MMP_RS04125 are separated by 214 nucleotides MMP_RS04125 and MMP_RS04130 are separated by 102 nucleotides
MMP_RS04115: MMP_RS04115 - cytosine permease, at 781,596 to 782,831
_RS04115
MMP_RS04120: MMP_RS04120 - hypothetical protein, at 783,205 to 783,807
_RS04120
MMP_RS04125: MMP_RS04125 - TetR/AcrR family transcriptional regulator, at 784,022 to 784,600
_RS04125
MMP_RS04130: MMP_RS04130 - alpha/beta hydrolase, at 784,703 to 785,689
_RS04130
Position (kb) 783
784 Strain fitness (log2 ratio) -1
0
1 at 782.314 kb on + strand, within MMP_RS04115 at 782.358 kb on + strand, within MMP_RS04115 at 782.361 kb on - strand, within MMP_RS04115 at 782.364 kb on - strand, within MMP_RS04115 at 782.365 kb on + strand, within MMP_RS04115 at 782.370 kb on + strand, within MMP_RS04115 at 782.390 kb on + strand, within MMP_RS04115 at 782.399 kb on - strand, within MMP_RS04115 at 782.400 kb on + strand, within MMP_RS04115 at 782.406 kb on - strand, within MMP_RS04115 at 782.427 kb on - strand, within MMP_RS04115 at 782.427 kb on - strand, within MMP_RS04115 at 782.428 kb on + strand, within MMP_RS04115 at 782.437 kb on + strand, within MMP_RS04115 at 782.536 kb on - strand, within MMP_RS04115 at 782.536 kb on - strand, within MMP_RS04115 at 782.605 kb on - strand, within MMP_RS04115 at 782.626 kb on + strand, within MMP_RS04115 at 782.637 kb on - strand, within MMP_RS04115 at 782.758 kb on + strand at 782.833 kb on + strand at 782.838 kb on + strand at 782.838 kb on + strand at 782.849 kb on + strand at 782.919 kb on - strand at 782.920 kb on + strand at 782.920 kb on + strand at 782.921 kb on - strand at 782.949 kb on + strand at 782.956 kb on + strand at 782.989 kb on + strand at 783.008 kb on + strand at 783.051 kb on - strand at 783.051 kb on - strand at 783.078 kb on + strand at 783.078 kb on + strand at 783.106 kb on + strand at 783.146 kb on - strand at 783.168 kb on + strand at 783.226 kb on + strand at 783.226 kb on + strand at 783.228 kb on + strand at 783.228 kb on + strand at 783.257 kb on - strand at 783.356 kb on - strand, within MMP_RS04120 at 783.418 kb on - strand, within MMP_RS04120 at 783.466 kb on - strand, within MMP_RS04120 at 783.512 kb on + strand, within MMP_RS04120 at 783.569 kb on + strand, within MMP_RS04120 at 783.667 kb on - strand, within MMP_RS04120 at 783.667 kb on - strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.668 kb on + strand, within MMP_RS04120 at 783.671 kb on - strand, within MMP_RS04120 at 783.671 kb on - strand, within MMP_RS04120 at 783.678 kb on - strand, within MMP_RS04120 at 783.678 kb on - strand, within MMP_RS04120 at 783.679 kb on + strand, within MMP_RS04120 at 783.681 kb on - strand, within MMP_RS04120 at 783.687 kb on - strand, within MMP_RS04120 at 783.693 kb on + strand, within MMP_RS04120 at 783.717 kb on - strand, within MMP_RS04120 at 783.759 kb on - strand at 783.795 kb on - strand at 783.800 kb on - strand at 783.801 kb on + strand at 783.819 kb on + strand at 783.850 kb on - strand at 783.850 kb on - strand at 783.855 kb on - strand at 783.859 kb on + strand at 783.859 kb on + strand at 783.861 kb on - strand at 783.866 kb on - strand at 783.866 kb on - strand at 783.904 kb on - strand at 783.921 kb on - strand at 783.969 kb on - strand at 783.969 kb on - strand at 783.970 kb on + strand at 783.970 kb on + strand at 783.970 kb on + strand at 783.972 kb on + strand at 784.017 kb on - strand at 784.017 kb on - strand at 784.017 kb on - strand at 784.018 kb on + strand at 784.018 kb on + strand at 784.018 kb on + strand at 784.019 kb on - strand at 784.019 kb on - strand at 784.019 kb on - strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.020 kb on + strand at 784.022 kb on + strand at 784.022 kb on + strand at 784.022 kb on + strand at 784.055 kb on + strand at 784.142 kb on + strand, within MMP_RS04125 at 784.504 kb on + strand, within MMP_RS04125 at 784.513 kb on + strand, within MMP_RS04125 at 784.534 kb on - strand, within MMP_RS04125 at 784.547 kb on + strand at 784.573 kb on - strand at 784.576 kb on + strand at 784.576 kb on + strand at 784.610 kb on + strand at 784.649 kb on - strand at 784.650 kb on + strand at 784.653 kb on - strand at 784.658 kb on - strand at 784.671 kb on - strand at 784.765 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Formate McCas no stress control 1 remove 782,314 + MMP_RS04115 0.58 +0.3 782,358 + MMP_RS04115 0.62 -0.3 782,361 - MMP_RS04115 0.62 -0.3 782,364 - MMP_RS04115 0.62 -0.3 782,365 + MMP_RS04115 0.62 +0.1 782,370 + MMP_RS04115 0.63 -0.1 782,390 + MMP_RS04115 0.64 -0.6 782,399 - MMP_RS04115 0.65 +0.2 782,400 + MMP_RS04115 0.65 -0.3 782,406 - MMP_RS04115 0.66 +0.1 782,427 - MMP_RS04115 0.67 -0.0 782,427 - MMP_RS04115 0.67 -0.2 782,428 + MMP_RS04115 0.67 +0.3 782,437 + MMP_RS04115 0.68 -0.5 782,536 - MMP_RS04115 0.76 -0.5 782,536 - MMP_RS04115 0.76 -1.3 782,605 - MMP_RS04115 0.82 +0.2 782,626 + MMP_RS04115 0.83 -0.2 782,637 - MMP_RS04115 0.84 +0.3 782,758 + +0.1 782,833 + +0.3 782,838 + -0.0 782,838 + -0.0 782,849 + +1.2 782,919 - -0.1 782,920 + +0.2 782,920 + -0.5 782,921 - -0.4 782,949 + +0.9 782,956 + -0.3 782,989 + -0.3 783,008 + +0.1 783,051 - -0.0 783,051 - -0.2 783,078 + +0.1 783,078 + +0.2 783,106 + +0.1 783,146 - -0.0 783,168 + -0.5 783,226 + -0.9 783,226 + +0.4 783,228 + -0.1 783,228 + -0.1 783,257 - -0.3 783,356 - MMP_RS04120 0.25 -0.2 783,418 - MMP_RS04120 0.35 +0.5 783,466 - MMP_RS04120 0.43 -0.2 783,512 + MMP_RS04120 0.51 +0.5 783,569 + MMP_RS04120 0.60 +0.5 783,667 - MMP_RS04120 0.77 +0.0 783,667 - MMP_RS04120 0.77 -0.7 783,668 + MMP_RS04120 0.77 -0.1 783,668 + MMP_RS04120 0.77 -0.2 783,668 + MMP_RS04120 0.77 -0.2 783,668 + MMP_RS04120 0.77 -0.1 783,671 - MMP_RS04120 0.77 +0.2 783,671 - MMP_RS04120 0.77 +0.3 783,678 - MMP_RS04120 0.78 +0.1 783,678 - MMP_RS04120 0.78 +0.5 783,679 + MMP_RS04120 0.79 -0.1 783,681 - MMP_RS04120 0.79 -0.1 783,687 - MMP_RS04120 0.80 +0.2 783,693 + MMP_RS04120 0.81 -0.2 783,717 - MMP_RS04120 0.85 +0.3 783,759 - -0.2 783,795 - +0.1 783,800 - +0.0 783,801 + -0.0 783,819 + +0.2 783,850 - -0.2 783,850 - +0.3 783,855 - +0.9 783,859 + +0.2 783,859 + +0.3 783,861 - -0.1 783,866 - +0.1 783,866 - +0.6 783,904 - -0.0 783,921 - -0.1 783,969 - -0.5 783,969 - -0.2 783,970 + +0.4 783,970 + +0.2 783,970 + +0.3 783,972 + -0.1 784,017 - -0.0 784,017 - +0.5 784,017 - -0.1 784,018 + +0.8 784,018 + +0.1 784,018 + +0.5 784,019 - -0.2 784,019 - +0.1 784,019 - +0.5 784,020 + +0.0 784,020 + -0.4 784,020 + +0.0 784,020 + -0.0 784,020 + +0.4 784,022 + -0.2 784,022 + -0.5 784,022 + -0.0 784,055 + +0.4 784,142 + MMP_RS04125 0.21 -0.2 784,504 + MMP_RS04125 0.83 -0.0 784,513 + MMP_RS04125 0.85 -0.3 784,534 - MMP_RS04125 0.88 -0.4 784,547 + -0.0 784,573 - -0.3 784,576 + -0.1 784,576 + -0.1 784,610 + +0.4 784,649 - +0.0 784,650 + -0.6 784,653 - +0.0 784,658 - -0.8 784,671 - +0.2 784,765 + +0.3
Or see this region's nucleotide sequence