Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03610

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03605 and MMP_RS03610 are separated by 94 nucleotidesMMP_RS03610 and MMP_RS03615 are separated by 66 nucleotidesMMP_RS03615 and MMP_RS03620 are separated by 5 nucleotides MMP_RS03605: MMP_RS03605 - O-phosphoserine--tRNA ligase, at 675,756 to 677,369 _RS03605 MMP_RS03610: MMP_RS03610 - NCS2 family permease, at 677,464 to 678,765 _RS03610 MMP_RS03615: MMP_RS03615 - 4Fe-4S binding protein, at 678,832 to 679,533 _RS03615 MMP_RS03620: MMP_RS03620 - hypothetical protein, at 679,539 to 680,084 _RS03620 Position (kb) 677 678 679Strain fitness (log2 ratio) -2 -1 0 1at 676.557 kb on + strandat 676.684 kb on - strandat 676.936 kb on + strandat 677.133 kb on + strandat 677.439 kb on - strandat 677.439 kb on - strandat 677.440 kb on + strandat 677.440 kb on + strandat 677.485 kb on - strandat 677.485 kb on - strandat 677.485 kb on - strandat 677.486 kb on + strandat 677.541 kb on - strandat 677.541 kb on - strandat 677.541 kb on - strandat 677.564 kb on + strandat 677.564 kb on + strandat 677.564 kb on + strandat 677.570 kb on - strandat 677.637 kb on - strand, within MMP_RS03610at 677.637 kb on - strand, within MMP_RS03610at 677.637 kb on - strand, within MMP_RS03610at 677.637 kb on - strand, within MMP_RS03610at 677.637 kb on - strand, within MMP_RS03610at 677.638 kb on + strand, within MMP_RS03610at 677.661 kb on - strand, within MMP_RS03610at 677.679 kb on - strand, within MMP_RS03610at 677.679 kb on - strand, within MMP_RS03610at 677.680 kb on + strand, within MMP_RS03610at 677.739 kb on + strand, within MMP_RS03610at 677.797 kb on + strand, within MMP_RS03610at 677.840 kb on - strand, within MMP_RS03610at 677.874 kb on - strand, within MMP_RS03610at 677.883 kb on + strand, within MMP_RS03610at 677.883 kb on + strand, within MMP_RS03610at 677.949 kb on - strand, within MMP_RS03610at 677.950 kb on + strand, within MMP_RS03610at 677.950 kb on + strand, within MMP_RS03610at 677.950 kb on + strand, within MMP_RS03610at 677.958 kb on + strand, within MMP_RS03610at 678.183 kb on - strand, within MMP_RS03610at 678.198 kb on + strand, within MMP_RS03610at 678.231 kb on + strand, within MMP_RS03610at 678.237 kb on - strand, within MMP_RS03610at 678.317 kb on - strand, within MMP_RS03610at 678.318 kb on + strand, within MMP_RS03610at 678.361 kb on + strand, within MMP_RS03610at 678.361 kb on + strand, within MMP_RS03610at 678.373 kb on + strand, within MMP_RS03610at 678.379 kb on - strand, within MMP_RS03610at 678.379 kb on - strand, within MMP_RS03610at 678.437 kb on - strand, within MMP_RS03610at 678.437 kb on - strand, within MMP_RS03610at 678.456 kb on + strand, within MMP_RS03610at 678.499 kb on - strand, within MMP_RS03610at 678.500 kb on + strand, within MMP_RS03610at 678.723 kb on + strandat 678.801 kb on - strandat 678.892 kb on + strandat 678.892 kb on + strandat 678.972 kb on - strand, within MMP_RS03615at 679.044 kb on + strand, within MMP_RS03615at 679.099 kb on - strand, within MMP_RS03615at 679.101 kb on - strand, within MMP_RS03615at 679.102 kb on + strand, within MMP_RS03615at 679.166 kb on - strand, within MMP_RS03615at 679.167 kb on + strand, within MMP_RS03615at 679.174 kb on + strand, within MMP_RS03615at 679.179 kb on - strand, within MMP_RS03615at 679.215 kb on + strand, within MMP_RS03615at 679.252 kb on - strand, within MMP_RS03615at 679.330 kb on - strand, within MMP_RS03615at 679.332 kb on - strand, within MMP_RS03615at 679.384 kb on - strand, within MMP_RS03615at 679.385 kb on + strand, within MMP_RS03615at 679.461 kb on - strand, within MMP_RS03615at 679.484 kb on + strandat 679.668 kb on - strand, within MMP_RS03620at 679.669 kb on + strand, within MMP_RS03620at 679.680 kb on - strand, within MMP_RS03620at 679.702 kb on - strand, within MMP_RS03620at 679.704 kb on - strand, within MMP_RS03620at 679.705 kb on + strand, within MMP_RS03620at 679.748 kb on - strand, within MMP_RS03620at 679.749 kb on + strand, within MMP_RS03620at 679.753 kb on + strand, within MMP_RS03620

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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676,557 + -0.8
676,684 - -0.9
676,936 + -1.8
677,133 + -2.5
677,439 - +0.4
677,439 - +0.1
677,440 + -1.4
677,440 + -0.9
677,485 - -0.0
677,485 - +0.2
677,485 - -0.1
677,486 + -0.3
677,541 - +0.4
677,541 - -0.2
677,541 - +0.1
677,564 + -0.4
677,564 + -0.1
677,564 + +0.2
677,570 - -0.2
677,637 - MMP_RS03610 0.13 -0.1
677,637 - MMP_RS03610 0.13 -0.4
677,637 - MMP_RS03610 0.13 -0.3
677,637 - MMP_RS03610 0.13 -0.0
677,637 - MMP_RS03610 0.13 -0.3
677,638 + MMP_RS03610 0.13 +0.4
677,661 - MMP_RS03610 0.15 +0.1
677,679 - MMP_RS03610 0.17 +0.1
677,679 - MMP_RS03610 0.17 -0.1
677,680 + MMP_RS03610 0.17 +0.5
677,739 + MMP_RS03610 0.21 +0.6
677,797 + MMP_RS03610 0.26 -0.0
677,840 - MMP_RS03610 0.29 +0.2
677,874 - MMP_RS03610 0.31 +0.3
677,883 + MMP_RS03610 0.32 +0.4
677,883 + MMP_RS03610 0.32 +0.3
677,949 - MMP_RS03610 0.37 -0.1
677,950 + MMP_RS03610 0.37 +0.4
677,950 + MMP_RS03610 0.37 -0.2
677,950 + MMP_RS03610 0.37 +0.0
677,958 + MMP_RS03610 0.38 -1.8
678,183 - MMP_RS03610 0.55 +0.3
678,198 + MMP_RS03610 0.56 -0.2
678,231 + MMP_RS03610 0.59 -0.3
678,237 - MMP_RS03610 0.59 -0.3
678,317 - MMP_RS03610 0.66 -0.0
678,318 + MMP_RS03610 0.66 -0.1
678,361 + MMP_RS03610 0.69 +0.3
678,361 + MMP_RS03610 0.69 +0.2
678,373 + MMP_RS03610 0.70 -0.3
678,379 - MMP_RS03610 0.70 +0.5
678,379 - MMP_RS03610 0.70 -0.0
678,437 - MMP_RS03610 0.75 +0.3
678,437 - MMP_RS03610 0.75 +0.4
678,456 + MMP_RS03610 0.76 -0.3
678,499 - MMP_RS03610 0.79 +0.4
678,500 + MMP_RS03610 0.80 +0.2
678,723 + -0.1
678,801 - -0.3
678,892 + -0.2
678,892 + -0.5
678,972 - MMP_RS03615 0.20 +0.1
679,044 + MMP_RS03615 0.30 +0.4
679,099 - MMP_RS03615 0.38 -0.0
679,101 - MMP_RS03615 0.38 -0.0
679,102 + MMP_RS03615 0.38 +0.0
679,166 - MMP_RS03615 0.48 -0.1
679,167 + MMP_RS03615 0.48 +0.4
679,174 + MMP_RS03615 0.49 -0.1
679,179 - MMP_RS03615 0.49 +0.2
679,215 + MMP_RS03615 0.55 +1.4
679,252 - MMP_RS03615 0.60 -0.0
679,330 - MMP_RS03615 0.71 +0.1
679,332 - MMP_RS03615 0.71 +0.3
679,384 - MMP_RS03615 0.79 +0.5
679,385 + MMP_RS03615 0.79 +0.0
679,461 - MMP_RS03615 0.90 +0.6
679,484 + +0.4
679,668 - MMP_RS03620 0.24 +0.1
679,669 + MMP_RS03620 0.24 -0.6
679,680 - MMP_RS03620 0.26 -0.6
679,702 - MMP_RS03620 0.30 -0.2
679,704 - MMP_RS03620 0.30 +0.0
679,705 + MMP_RS03620 0.30 -0.2
679,748 - MMP_RS03620 0.38 -1.0
679,749 + MMP_RS03620 0.38 +0.1
679,753 + MMP_RS03620 0.39 -0.2

Or see this region's nucleotide sequence