Strain Fitness in Methanococcus maripaludis S2 around MMP_RS00125

Experiment: Formate McCas no stress control 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS00115 and MMP_RS00120 are separated by 72 nucleotidesMMP_RS00120 and MMP_RS00125 are separated by 29 nucleotidesMMP_RS00125 and MMP_RS00130 are separated by 91 nucleotidesMMP_RS00130 and MMP_RS00135 are separated by 116 nucleotides MMP_RS00115: MMP_RS00115 - radical SAM protein, at 26,673 to 27,725 _RS00115 MMP_RS00120: MMP_RS00120 - LysR family transcriptional regulator, at 27,798 to 28,640 _RS00120 MMP_RS00125: MMP_RS00125 - DUF2798 domain-containing protein, at 28,670 to 28,897 _RS00125 MMP_RS00130: MMP_RS00130 - nickel-responsive transcriptional regulator NikR, at 28,989 to 29,414 _RS00130 MMP_RS00135: MMP_RS00135 - DUF2121 domain-containing protein, at 29,531 to 30,406 _RS00135 Position (kb) 28 29Strain fitness (log2 ratio) -3 -2 -1 0 1at 27.725 kb on - strandat 27.728 kb on - strandat 27.739 kb on + strandat 27.764 kb on - strandat 27.765 kb on + strandat 27.823 kb on - strandat 27.824 kb on + strandat 27.840 kb on + strandat 27.842 kb on + strandat 27.846 kb on - strandat 27.846 kb on - strandat 27.847 kb on + strandat 27.847 kb on + strandat 27.848 kb on - strandat 28.059 kb on - strand, within MMP_RS00120at 28.060 kb on + strand, within MMP_RS00120at 28.071 kb on - strand, within MMP_RS00120at 28.115 kb on - strand, within MMP_RS00120at 28.118 kb on + strand, within MMP_RS00120at 28.332 kb on - strand, within MMP_RS00120at 28.609 kb on - strandat 28.657 kb on + strandat 28.659 kb on - strandat 28.660 kb on + strandat 28.683 kb on + strandat 28.829 kb on - strand, within MMP_RS00125at 28.900 kb on + strandat 28.900 kb on + strandat 28.924 kb on - strandat 29.300 kb on - strand, within MMP_RS00130at 29.390 kb on - strandat 29.390 kb on - strandat 29.390 kb on - strandat 29.417 kb on - strandat 29.417 kb on - strandat 29.418 kb on + strandat 29.453 kb on + strandat 29.459 kb on - strandat 29.516 kb on + strandat 29.746 kb on + strand, within MMP_RS00135at 29.770 kb on + strand, within MMP_RS00135at 29.770 kb on + strand, within MMP_RS00135at 29.807 kb on - strand, within MMP_RS00135at 29.807 kb on - strand, within MMP_RS00135

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 1
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27,725 - -1.7
27,728 - -1.7
27,739 + -1.4
27,764 - -0.1
27,765 + -0.8
27,823 - -1.4
27,824 + -3.5
27,840 + -1.3
27,842 + -1.5
27,846 - -0.1
27,846 - -0.6
27,847 + -0.7
27,847 + -0.5
27,848 - -0.7
28,059 - MMP_RS00120 0.31 -0.6
28,060 + MMP_RS00120 0.31 -0.7
28,071 - MMP_RS00120 0.32 -0.7
28,115 - MMP_RS00120 0.38 -0.5
28,118 + MMP_RS00120 0.38 -0.3
28,332 - MMP_RS00120 0.63 -0.6
28,609 - -1.1
28,657 + -0.1
28,659 - -1.0
28,660 + +0.6
28,683 + -0.3
28,829 - MMP_RS00125 0.70 -0.7
28,900 + +0.4
28,900 + -0.3
28,924 - +0.4
29,300 - MMP_RS00130 0.73 +0.3
29,390 - -0.7
29,390 - -0.2
29,390 - -0.2
29,417 - -0.4
29,417 - -0.3
29,418 + -0.6
29,453 + -0.8
29,459 - -0.3
29,516 + -0.1
29,746 + MMP_RS00135 0.25 -0.1
29,770 + MMP_RS00135 0.27 +0.2
29,770 + MMP_RS00135 0.27 +0.1
29,807 - MMP_RS00135 0.32 +0.5
29,807 - MMP_RS00135 0.32 +0.0

Or see this region's nucleotide sequence