Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3447 and Dsui_3448 overlap by 1 nucleotides Dsui_3448 and Dsui_3449 are separated by 66 nucleotides Dsui_3449 and Dsui_3450 are separated by 139 nucleotides
Dsui_3447: Dsui_3447 - signal transduction histidine kinase, at 3,706,188 to 3,707,558
_3447
Dsui_3448: Dsui_3448 - response regulator with CheY-like receiver domain and winged-helix DNA-binding domain, at 3,707,558 to 3,708,256
_3448
Dsui_3449: Dsui_3449 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,708,323 to 3,710,467
_3449
Dsui_3450: Dsui_3450 - acetyl-CoA hydrolase, at 3,710,607 to 3,711,902
_3450
Position (kb)
3708
3709
3710
3711 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3707.399 kb on + strand at 3707.400 kb on - strand, within Dsui_3447 at 3707.432 kb on + strand at 3707.475 kb on + strand at 3707.633 kb on - strand, within Dsui_3448 at 3707.635 kb on + strand at 3707.824 kb on - strand, within Dsui_3448 at 3707.907 kb on - strand, within Dsui_3448 at 3708.043 kb on - strand, within Dsui_3448 at 3708.103 kb on - strand, within Dsui_3448 at 3708.134 kb on + strand at 3708.137 kb on - strand, within Dsui_3448 at 3708.234 kb on - strand at 3708.266 kb on - strand at 3708.266 kb on - strand at 3708.339 kb on - strand at 3708.667 kb on + strand, within Dsui_3449 at 3708.726 kb on - strand, within Dsui_3449 at 3709.049 kb on - strand at 3709.183 kb on + strand, within Dsui_3449 at 3709.209 kb on + strand, within Dsui_3449 at 3709.223 kb on - strand, within Dsui_3449 at 3709.256 kb on + strand, within Dsui_3449 at 3709.264 kb on - strand at 3709.281 kb on + strand, within Dsui_3449 at 3709.289 kb on - strand at 3709.433 kb on - strand, within Dsui_3449 at 3709.480 kb on + strand, within Dsui_3449 at 3709.562 kb on + strand, within Dsui_3449 at 3709.574 kb on - strand, within Dsui_3449 at 3709.595 kb on + strand, within Dsui_3449 at 3709.857 kb on + strand, within Dsui_3449 at 3709.862 kb on + strand, within Dsui_3449 at 3709.875 kb on - strand, within Dsui_3449 at 3709.937 kb on - strand, within Dsui_3449 at 3709.950 kb on + strand, within Dsui_3449 at 3709.950 kb on + strand, within Dsui_3449 at 3710.126 kb on - strand, within Dsui_3449 at 3710.168 kb on - strand, within Dsui_3449 at 3710.359 kb on - strand at 3710.543 kb on + strand at 3710.605 kb on + strand at 3710.613 kb on - strand at 3710.627 kb on - strand at 3710.875 kb on - strand, within Dsui_3450 at 3710.916 kb on + strand, within Dsui_3450 at 3710.921 kb on + strand, within Dsui_3450 at 3710.960 kb on + strand, within Dsui_3450 at 3711.028 kb on + strand, within Dsui_3450 at 3711.056 kb on - strand, within Dsui_3450 at 3711.111 kb on - strand, within Dsui_3450 at 3711.115 kb on + strand, within Dsui_3450 at 3711.163 kb on - strand, within Dsui_3450 at 3711.232 kb on + strand, within Dsui_3450 at 3711.345 kb on - strand, within Dsui_3450 at 3711.347 kb on + strand, within Dsui_3450 at 3711.353 kb on + strand, within Dsui_3450 at 3711.417 kb on - strand, within Dsui_3450 at 3711.434 kb on + strand, within Dsui_3450 at 3711.434 kb on + strand, within Dsui_3450 at 3711.442 kb on - strand, within Dsui_3450
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,707,399 + +0.5 3,707,400 - Dsui_3447 0.88 -1.0 3,707,432 + +0.5 3,707,475 + -0.5 3,707,633 - Dsui_3448 0.11 +0.5 3,707,635 + -1.0 3,707,824 - Dsui_3448 0.38 -2.0 3,707,907 - Dsui_3448 0.50 -1.5 3,708,043 - Dsui_3448 0.69 -0.5 3,708,103 - Dsui_3448 0.78 -1.6 3,708,134 + -0.5 3,708,137 - Dsui_3448 0.83 -0.5 3,708,234 - -0.5 3,708,266 - +0.5 3,708,266 - -0.5 3,708,339 - -1.0 3,708,667 + Dsui_3449 0.16 +0.3 3,708,726 - Dsui_3449 0.19 -1.0 3,709,049 - +0.5 3,709,183 + Dsui_3449 0.40 +0.2 3,709,209 + Dsui_3449 0.41 +0.3 3,709,223 - Dsui_3449 0.42 -0.5 3,709,256 + Dsui_3449 0.43 +0.2 3,709,264 - +0.5 3,709,281 + Dsui_3449 0.45 +0.2 3,709,289 - -1.5 3,709,433 - Dsui_3449 0.52 -2.6 3,709,480 + Dsui_3449 0.54 +0.2 3,709,562 + Dsui_3449 0.58 +0.0 3,709,574 - Dsui_3449 0.58 -2.0 3,709,595 + Dsui_3449 0.59 +0.4 3,709,857 + Dsui_3449 0.72 +0.3 3,709,862 + Dsui_3449 0.72 +0.3 3,709,875 - Dsui_3449 0.72 -1.0 3,709,937 - Dsui_3449 0.75 -1.5 3,709,950 + Dsui_3449 0.76 +0.3 3,709,950 + Dsui_3449 0.76 +0.1 3,710,126 - Dsui_3449 0.84 +0.5 3,710,168 - Dsui_3449 0.86 +0.5 3,710,359 - -1.5 3,710,543 + -1.8 3,710,605 + -3.3 3,710,613 - +0.5 3,710,627 - +0.5 3,710,875 - Dsui_3450 0.21 -1.8 3,710,916 + Dsui_3450 0.24 -0.5 3,710,921 + Dsui_3450 0.24 -0.9 3,710,960 + Dsui_3450 0.27 -0.7 3,711,028 + Dsui_3450 0.32 -0.5 3,711,056 - Dsui_3450 0.35 -1.5 3,711,111 - Dsui_3450 0.39 -1.5 3,711,115 + Dsui_3450 0.39 -0.3 3,711,163 - Dsui_3450 0.43 +0.5 3,711,232 + Dsui_3450 0.48 -2.5 3,711,345 - Dsui_3450 0.57 -0.5 3,711,347 + Dsui_3450 0.57 -0.8 3,711,353 + Dsui_3450 0.58 -0.5 3,711,417 - Dsui_3450 0.62 -1.0 3,711,434 + Dsui_3450 0.64 -0.4 3,711,434 + Dsui_3450 0.64 -0.6 3,711,442 - Dsui_3450 0.64 -0.5
Or see this region's nucleotide sequence