Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3415 and Dsui_3416 overlap by 8 nucleotides Dsui_3416 and Dsui_3417 are separated by 56 nucleotides Dsui_3417 and Dsui_3418 overlap by 8 nucleotides
Dsui_3415: Dsui_3415 - FAD/FMN-dependent dehydrogenase, at 3,667,614 to 3,669,074
_3415
Dsui_3416: Dsui_3416 - transcriptional regulator, at 3,669,067 to 3,669,876
_3416
Dsui_3417: Dsui_3417 - hypothetical protein, at 3,669,933 to 3,670,328
_3417
Dsui_3418: Dsui_3418 - putative permease, at 3,670,321 to 3,671,055
_3418
Position (kb)
3669
3670 Strain fitness (log2 ratio)
-2
-1
0
1 at 3668.080 kb on + strand at 3668.088 kb on - strand, within Dsui_3415 at 3668.088 kb on - strand, within Dsui_3415 at 3668.137 kb on + strand, within Dsui_3415 at 3668.256 kb on - strand, within Dsui_3415 at 3668.341 kb on - strand, within Dsui_3415 at 3668.370 kb on - strand, within Dsui_3415 at 3668.385 kb on - strand, within Dsui_3415 at 3668.395 kb on - strand, within Dsui_3415 at 3668.522 kb on + strand, within Dsui_3415 at 3668.643 kb on - strand, within Dsui_3415 at 3668.720 kb on - strand, within Dsui_3415 at 3668.720 kb on - strand, within Dsui_3415 at 3668.720 kb on - strand, within Dsui_3415 at 3668.743 kb on - strand, within Dsui_3415 at 3668.872 kb on - strand, within Dsui_3415 at 3668.921 kb on + strand, within Dsui_3415 at 3668.985 kb on - strand at 3669.073 kb on - strand at 3669.221 kb on + strand, within Dsui_3416 at 3669.221 kb on + strand at 3669.431 kb on + strand at 3669.516 kb on - strand, within Dsui_3416 at 3669.576 kb on + strand at 3669.673 kb on + strand at 3669.828 kb on + strand at 3669.830 kb on - strand at 3669.912 kb on - strand at 3669.960 kb on - strand at 3670.048 kb on + strand at 3670.149 kb on + strand at 3670.254 kb on + strand at 3670.272 kb on - strand at 3670.311 kb on - strand at 3670.418 kb on - strand at 3670.494 kb on + strand at 3670.685 kb on - strand, within Dsui_3418 at 3670.770 kb on + strand at 3670.824 kb on + strand at 3670.845 kb on + strand, within Dsui_3418 at 3670.853 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,668,080 + +0.5 3,668,088 - Dsui_3415 0.32 +0.5 3,668,088 - Dsui_3415 0.32 +0.8 3,668,137 + Dsui_3415 0.36 -2.3 3,668,256 - Dsui_3415 0.44 +0.9 3,668,341 - Dsui_3415 0.50 +0.8 3,668,370 - Dsui_3415 0.52 +0.4 3,668,385 - Dsui_3415 0.53 +0.7 3,668,395 - Dsui_3415 0.53 +0.3 3,668,522 + Dsui_3415 0.62 -1.0 3,668,643 - Dsui_3415 0.70 +0.5 3,668,720 - Dsui_3415 0.76 +0.5 3,668,720 - Dsui_3415 0.76 -0.1 3,668,720 - Dsui_3415 0.76 +0.4 3,668,743 - Dsui_3415 0.77 +0.5 3,668,872 - Dsui_3415 0.86 +0.2 3,668,921 + Dsui_3415 0.89 -2.0 3,668,985 - +0.3 3,669,073 - +0.3 3,669,221 + Dsui_3416 0.19 -1.0 3,669,221 + -0.5 3,669,431 + -0.5 3,669,516 - Dsui_3416 0.55 +0.2 3,669,576 + +0.5 3,669,673 + -0.5 3,669,828 + +0.5 3,669,830 - +0.1 3,669,912 - +0.5 3,669,960 - -1.0 3,670,048 + +0.5 3,670,149 + -0.5 3,670,254 + -0.5 3,670,272 - +0.5 3,670,311 - -1.0 3,670,418 - +0.5 3,670,494 + -1.0 3,670,685 - Dsui_3418 0.50 -2.3 3,670,770 + -0.5 3,670,824 + +0.5 3,670,845 + Dsui_3418 0.71 -1.8 3,670,853 - -0.5
Or see this region's nucleotide sequence