Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3367 and Dsui_3368 are separated by 175 nucleotides Dsui_3368 and Dsui_3369 are separated by 79 nucleotides Dsui_3369 and Dsui_3370 are separated by 49 nucleotides Dsui_3370 and Dsui_3371 are separated by 207 nucleotides
Dsui_3367: Dsui_3367 - ABC-type sugar transport system, periplasmic component, at 3,607,849 to 3,609,213
_3367
Dsui_3368: Dsui_3368 - hypothetical protein, at 3,609,389 to 3,610,102
_3368
Dsui_3369: Dsui_3369 - acyl-CoA dehydrogenase, at 3,610,182 to 3,611,366
_3369
Dsui_3370: Dsui_3370 - hypothetical protein, at 3,611,416 to 3,611,847
_3370
Dsui_3371: Dsui_3371 - putative oxidoreductase, aryl-alcohol dehydrogenase like protein, at 3,612,055 to 3,613,107
_3371
Position (kb)
3610
3611
3612 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3609.220 kb on + strand at 3609.220 kb on + strand at 3609.220 kb on + strand at 3609.228 kb on - strand at 3609.228 kb on - strand at 3609.228 kb on - strand at 3609.228 kb on - strand at 3609.230 kb on + strand at 3609.417 kb on - strand at 3609.460 kb on - strand at 3609.490 kb on + strand, within Dsui_3368 at 3609.700 kb on - strand at 3609.700 kb on - strand, within Dsui_3368 at 3609.815 kb on + strand, within Dsui_3368 at 3609.825 kb on + strand at 3609.825 kb on + strand at 3609.825 kb on + strand, within Dsui_3368 at 3609.825 kb on + strand, within Dsui_3368 at 3609.859 kb on + strand, within Dsui_3368 at 3609.874 kb on + strand, within Dsui_3368 at 3609.874 kb on + strand, within Dsui_3368 at 3610.051 kb on - strand at 3610.272 kb on + strand at 3610.354 kb on + strand, within Dsui_3369 at 3610.445 kb on + strand, within Dsui_3369 at 3610.524 kb on + strand, within Dsui_3369 at 3610.527 kb on + strand, within Dsui_3369 at 3610.576 kb on + strand, within Dsui_3369 at 3610.764 kb on + strand, within Dsui_3369 at 3611.001 kb on + strand, within Dsui_3369 at 3611.002 kb on + strand, within Dsui_3369 at 3611.049 kb on - strand, within Dsui_3369 at 3611.132 kb on + strand, within Dsui_3369 at 3611.207 kb on - strand at 3611.266 kb on + strand at 3611.317 kb on + strand at 3611.317 kb on + strand at 3611.340 kb on - strand at 3611.342 kb on - strand at 3611.372 kb on + strand at 3611.373 kb on + strand at 3611.463 kb on - strand, within Dsui_3370 at 3611.485 kb on - strand at 3611.489 kb on - strand, within Dsui_3370 at 3611.536 kb on + strand, within Dsui_3370 at 3611.556 kb on - strand, within Dsui_3370 at 3611.616 kb on + strand, within Dsui_3370 at 3611.629 kb on + strand, within Dsui_3370 at 3611.637 kb on - strand, within Dsui_3370 at 3611.648 kb on + strand, within Dsui_3370 at 3611.677 kb on + strand, within Dsui_3370 at 3611.700 kb on + strand, within Dsui_3370 at 3611.753 kb on - strand, within Dsui_3370 at 3611.781 kb on - strand, within Dsui_3370 at 3611.849 kb on - strand at 3611.985 kb on - strand at 3612.071 kb on + strand at 3612.082 kb on + strand at 3612.133 kb on - strand at 3612.221 kb on - strand, within Dsui_3371
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,609,220 + +0.5 3,609,220 + -1.0 3,609,220 + +0.5 3,609,228 - +0.4 3,609,228 - -0.7 3,609,228 - +0.1 3,609,228 - -1.1 3,609,230 + -0.5 3,609,417 - +0.5 3,609,460 - +0.5 3,609,490 + Dsui_3368 0.14 -1.5 3,609,700 - +0.5 3,609,700 - Dsui_3368 0.44 -0.5 3,609,815 + Dsui_3368 0.60 -1.0 3,609,825 + -1.0 3,609,825 + +0.5 3,609,825 + Dsui_3368 0.61 +0.5 3,609,825 + Dsui_3368 0.61 -0.5 3,609,859 + Dsui_3368 0.66 -1.3 3,609,874 + Dsui_3368 0.68 -1.0 3,609,874 + Dsui_3368 0.68 +0.5 3,610,051 - -1.5 3,610,272 + -0.7 3,610,354 + Dsui_3369 0.15 +0.1 3,610,445 + Dsui_3369 0.22 -0.3 3,610,524 + Dsui_3369 0.29 -0.9 3,610,527 + Dsui_3369 0.29 -0.2 3,610,576 + Dsui_3369 0.33 +0.2 3,610,764 + Dsui_3369 0.49 -0.6 3,611,001 + Dsui_3369 0.69 -0.8 3,611,002 + Dsui_3369 0.69 -0.5 3,611,049 - Dsui_3369 0.73 -0.5 3,611,132 + Dsui_3369 0.80 -0.7 3,611,207 - +0.5 3,611,266 + +0.5 3,611,317 + -0.3 3,611,317 + -0.4 3,611,340 - -1.0 3,611,342 - -2.3 3,611,372 + -0.7 3,611,373 + +0.5 3,611,463 - Dsui_3370 0.11 -0.5 3,611,485 - +0.5 3,611,489 - Dsui_3370 0.17 -1.8 3,611,536 + Dsui_3370 0.28 +0.6 3,611,556 - Dsui_3370 0.32 +0.5 3,611,616 + Dsui_3370 0.46 +1.1 3,611,629 + Dsui_3370 0.49 +0.0 3,611,637 - Dsui_3370 0.51 +0.5 3,611,648 + Dsui_3370 0.54 -0.0 3,611,677 + Dsui_3370 0.60 -0.0 3,611,700 + Dsui_3370 0.66 -0.2 3,611,753 - Dsui_3370 0.78 +0.5 3,611,781 - Dsui_3370 0.84 +0.5 3,611,849 - -2.6 3,611,985 - -0.5 3,612,071 + +0.5 3,612,082 + +0.5 3,612,133 - -1.9 3,612,221 - Dsui_3371 0.16 -3.5
Or see this region's nucleotide sequence