Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3328 and Dsui_3329 are separated by 242 nucleotides Dsui_3329 and Dsui_3330 are separated by 36 nucleotides Dsui_3330 and Dsui_3331 are separated by 4 nucleotides Dsui_3331 and Dsui_3332 are separated by 205 nucleotides Dsui_3332 and Dsui_3333 are separated by 165 nucleotides
Dsui_3328: Dsui_3328 - cytochrome c556, at 3,568,351 to 3,568,821
_3328
Dsui_3329: Dsui_3329 - hypothetical protein, at 3,569,064 to 3,569,381
_3329
Dsui_3330: Dsui_3330 - hypothetical protein, at 3,569,418 to 3,569,675
_3330
Dsui_3331: Dsui_3331 - adenylosuccinate lyase, at 3,569,680 to 3,571,047
_3331
Dsui_3332: Dsui_3332 - glutathione S-transferase, at 3,571,253 to 3,571,861
_3332
Dsui_3333: Dsui_3333 - response regulator with CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 3,572,027 to 3,573,034
_3333
Position (kb)
3569
3570
3571
3572 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3568.686 kb on + strand, within Dsui_3328 at 3568.748 kb on - strand, within Dsui_3328 at 3568.780 kb on - strand at 3568.804 kb on - strand at 3568.804 kb on - strand at 3568.810 kb on - strand at 3568.861 kb on + strand at 3568.905 kb on + strand at 3569.079 kb on - strand at 3569.095 kb on + strand at 3569.174 kb on + strand, within Dsui_3329 at 3569.230 kb on + strand, within Dsui_3329 at 3569.252 kb on - strand, within Dsui_3329 at 3569.321 kb on + strand, within Dsui_3329 at 3569.321 kb on + strand, within Dsui_3329 at 3569.321 kb on + strand, within Dsui_3329 at 3569.321 kb on + strand, within Dsui_3329 at 3569.329 kb on - strand, within Dsui_3329 at 3569.329 kb on - strand, within Dsui_3329 at 3569.336 kb on + strand, within Dsui_3329 at 3569.344 kb on - strand, within Dsui_3329 at 3569.389 kb on + strand at 3569.442 kb on - strand at 3569.458 kb on + strand, within Dsui_3330 at 3569.581 kb on + strand, within Dsui_3330 at 3569.593 kb on + strand, within Dsui_3330 at 3569.673 kb on - strand at 3571.111 kb on - strand at 3571.130 kb on + strand at 3571.166 kb on + strand at 3571.181 kb on + strand at 3571.181 kb on + strand at 3571.189 kb on - strand at 3571.218 kb on - strand at 3571.286 kb on - strand at 3571.293 kb on + strand at 3571.293 kb on + strand at 3571.293 kb on + strand at 3571.301 kb on - strand at 3571.321 kb on + strand, within Dsui_3332 at 3571.366 kb on - strand, within Dsui_3332 at 3571.467 kb on + strand, within Dsui_3332 at 3571.530 kb on + strand, within Dsui_3332 at 3571.650 kb on + strand, within Dsui_3332 at 3571.690 kb on + strand, within Dsui_3332 at 3571.699 kb on - strand, within Dsui_3332 at 3571.732 kb on - strand at 3571.754 kb on - strand, within Dsui_3332 at 3571.832 kb on + strand at 3571.871 kb on - strand at 3571.923 kb on - strand at 3571.941 kb on - strand at 3571.946 kb on - strand at 3571.951 kb on + strand at 3571.970 kb on + strand at 3571.979 kb on - strand at 3571.989 kb on - strand at 3571.997 kb on + strand at 3571.997 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,568,686 + Dsui_3328 0.71 +0.6 3,568,748 - Dsui_3328 0.84 -0.1 3,568,780 - -0.4 3,568,804 - -0.1 3,568,804 - +0.1 3,568,810 - -0.3 3,568,861 + -2.8 3,568,905 + -1.8 3,569,079 - +0.3 3,569,095 + +0.6 3,569,174 + Dsui_3329 0.35 -0.4 3,569,230 + Dsui_3329 0.52 -2.4 3,569,252 - Dsui_3329 0.59 +0.0 3,569,321 + Dsui_3329 0.81 -0.4 3,569,321 + Dsui_3329 0.81 -2.2 3,569,321 + Dsui_3329 0.81 +0.6 3,569,321 + Dsui_3329 0.81 -0.4 3,569,329 - Dsui_3329 0.83 +0.1 3,569,329 - Dsui_3329 0.83 +0.1 3,569,336 + Dsui_3329 0.86 -1.4 3,569,344 - Dsui_3329 0.88 -0.0 3,569,389 + -1.0 3,569,442 - +0.2 3,569,458 + Dsui_3330 0.16 +0.6 3,569,581 + Dsui_3330 0.63 -1.0 3,569,593 + Dsui_3330 0.68 -2.0 3,569,673 - +0.1 3,571,111 - +0.6 3,571,130 + +0.6 3,571,166 + -0.4 3,571,181 + +0.6 3,571,181 + +0.6 3,571,189 - +0.6 3,571,218 - +0.6 3,571,286 - +0.6 3,571,293 + +0.2 3,571,293 + -0.1 3,571,293 + +0.3 3,571,301 - +0.6 3,571,321 + Dsui_3332 0.11 +0.0 3,571,366 - Dsui_3332 0.19 +0.6 3,571,467 + Dsui_3332 0.35 +0.5 3,571,530 + Dsui_3332 0.45 +0.9 3,571,650 + Dsui_3332 0.65 +0.0 3,571,690 + Dsui_3332 0.72 +0.1 3,571,699 - Dsui_3332 0.73 -0.4 3,571,732 - +0.6 3,571,754 - Dsui_3332 0.82 -1.4 3,571,832 + +0.2 3,571,871 - -1.0 3,571,923 - -0.4 3,571,941 - +0.6 3,571,946 - -0.4 3,571,951 + -0.4 3,571,970 + -0.4 3,571,979 - -0.4 3,571,989 - +0.6 3,571,997 + -0.0 3,571,997 + -0.2
Or see this region's nucleotide sequence