Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3310 and Dsui_3311 are separated by 8 nucleotides Dsui_3311 and Dsui_3312 are separated by 25 nucleotides Dsui_3312 and Dsui_3313 are separated by 63 nucleotides Dsui_3313 and Dsui_3314 are separated by 108 nucleotides Dsui_3314 and Dsui_3315 are separated by 10 nucleotides
Dsui_3310: Dsui_3310 - hypothetical protein, at 3,553,179 to 3,553,655
_3310
Dsui_3311: Dsui_3311 - uncharacterized protein SCO1/SenC/PrrC, at 3,553,664 to 3,554,260
_3311
Dsui_3312: Dsui_3312 - hypothetical protein, at 3,554,286 to 3,554,783
_3312
Dsui_3313: Dsui_3313 - hypothetical protein, at 3,554,847 to 3,555,242
_3313
Dsui_3314: Dsui_3314 - biopolymer transport protein, at 3,555,351 to 3,555,767
_3314
Dsui_3315: Dsui_3315 - biopolymer transport protein, at 3,555,778 to 3,556,497
_3315
Position (kb)
3554
3555 Strain fitness (log2 ratio)
-2
-1
0
1 at 3553.662 kb on - strand at 3553.671 kb on + strand at 3553.671 kb on + strand at 3553.671 kb on + strand at 3553.701 kb on - strand at 3553.880 kb on - strand, within Dsui_3311 at 3553.948 kb on + strand, within Dsui_3311 at 3553.949 kb on + strand, within Dsui_3311 at 3553.949 kb on + strand, within Dsui_3311 at 3553.956 kb on - strand, within Dsui_3311 at 3553.956 kb on - strand, within Dsui_3311 at 3553.956 kb on - strand, within Dsui_3311 at 3553.960 kb on + strand, within Dsui_3311 at 3553.987 kb on - strand, within Dsui_3311 at 3554.039 kb on + strand, within Dsui_3311 at 3554.039 kb on + strand, within Dsui_3311 at 3554.080 kb on + strand, within Dsui_3311 at 3554.135 kb on - strand, within Dsui_3311 at 3554.140 kb on - strand, within Dsui_3311 at 3554.245 kb on + strand at 3554.253 kb on - strand at 3554.321 kb on + strand at 3554.326 kb on + strand at 3554.326 kb on + strand at 3554.397 kb on + strand, within Dsui_3312 at 3554.496 kb on - strand, within Dsui_3312 at 3554.623 kb on + strand, within Dsui_3312 at 3554.629 kb on + strand, within Dsui_3312 at 3554.631 kb on - strand, within Dsui_3312 at 3554.643 kb on - strand, within Dsui_3312 at 3554.659 kb on + strand, within Dsui_3312 at 3554.770 kb on - strand at 3554.777 kb on + strand at 3554.845 kb on + strand at 3554.853 kb on - strand at 3554.855 kb on + strand at 3554.855 kb on + strand at 3554.863 kb on - strand at 3554.869 kb on + strand at 3554.911 kb on - strand, within Dsui_3313 at 3555.015 kb on - strand, within Dsui_3313 at 3555.080 kb on + strand at 3555.105 kb on + strand, within Dsui_3313 at 3555.113 kb on - strand, within Dsui_3313 at 3555.225 kb on - strand at 3555.251 kb on + strand at 3555.260 kb on - strand at 3555.277 kb on + strand at 3555.337 kb on + strand at 3555.342 kb on + strand at 3555.561 kb on + strand, within Dsui_3314 at 3555.589 kb on - strand, within Dsui_3314 at 3555.696 kb on + strand, within Dsui_3314
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,553,662 - -1.4 3,553,671 + -0.3 3,553,671 + -1.0 3,553,671 + -0.4 3,553,701 - -1.4 3,553,880 - Dsui_3311 0.36 -1.0 3,553,948 + Dsui_3311 0.48 +0.4 3,553,949 + Dsui_3311 0.48 +0.2 3,553,949 + Dsui_3311 0.48 -0.6 3,553,956 - Dsui_3311 0.49 -0.4 3,553,956 - Dsui_3311 0.49 -2.2 3,553,956 - Dsui_3311 0.49 -1.4 3,553,960 + Dsui_3311 0.50 -0.0 3,553,987 - Dsui_3311 0.54 +0.6 3,554,039 + Dsui_3311 0.63 -0.2 3,554,039 + Dsui_3311 0.63 +0.0 3,554,080 + Dsui_3311 0.70 -0.2 3,554,135 - Dsui_3311 0.79 -0.4 3,554,140 - Dsui_3311 0.80 -1.0 3,554,245 + -1.4 3,554,253 - +0.6 3,554,321 + -0.4 3,554,326 + -0.8 3,554,326 + -1.0 3,554,397 + Dsui_3312 0.22 -0.6 3,554,496 - Dsui_3312 0.42 -1.0 3,554,623 + Dsui_3312 0.68 -0.7 3,554,629 + Dsui_3312 0.69 -0.7 3,554,631 - Dsui_3312 0.69 +0.6 3,554,643 - Dsui_3312 0.72 -2.0 3,554,659 + Dsui_3312 0.75 -1.9 3,554,770 - -0.4 3,554,777 + -0.7 3,554,845 + +0.6 3,554,853 - +0.0 3,554,855 + -1.0 3,554,855 + +0.6 3,554,863 - +0.1 3,554,869 + -0.4 3,554,911 - Dsui_3313 0.16 -0.4 3,555,015 - Dsui_3313 0.42 +0.1 3,555,080 + +0.6 3,555,105 + Dsui_3313 0.65 +0.6 3,555,113 - Dsui_3313 0.67 -0.3 3,555,225 - +0.3 3,555,251 + -1.0 3,555,260 - +0.5 3,555,277 + -0.4 3,555,337 + -2.4 3,555,342 + -0.4 3,555,561 + Dsui_3314 0.50 -0.4 3,555,589 - Dsui_3314 0.57 -1.0 3,555,696 + Dsui_3314 0.83 -2.0
Or see this region's nucleotide sequence