Experiment: ALP with Zinc 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3280 and Dsui_3281 overlap by 4 nucleotides Dsui_3281 and Dsui_3282 are separated by 13 nucleotides Dsui_3282 and Dsui_3283 are separated by 446 nucleotides
Dsui_3280: Dsui_3280 - formate dehydrogenase, gamma subunit, at 3,517,442 to 3,518,062
_3280
Dsui_3281: Dsui_3281 - formate dehydrogenase, beta subunit, Fe-S containing, at 3,518,059 to 3,518,949
_3281
Dsui_3282: Dsui_3282 - formate dehydrogenase, alpha subunit, at 3,518,963 to 3,522,016
_3282
Dsui_3283: Dsui_3283 - formate dehydrogenase accessory protein FdhE, at 3,522,463 to 3,523,335
_3283
Position (kb)
3518
3519
3520
3521
3522
3523 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3517.987 kb on + strand, within Dsui_3280 at 3517.987 kb on - strand, within Dsui_3280 at 3518.079 kb on - strand at 3518.107 kb on - strand at 3518.137 kb on - strand at 3518.137 kb on - strand at 3518.154 kb on + strand, within Dsui_3281 at 3518.171 kb on + strand at 3518.179 kb on - strand, within Dsui_3281 at 3518.179 kb on - strand, within Dsui_3281 at 3518.181 kb on + strand, within Dsui_3281 at 3518.183 kb on + strand at 3518.207 kb on - strand, within Dsui_3281 at 3518.249 kb on - strand, within Dsui_3281 at 3518.292 kb on + strand at 3518.416 kb on - strand, within Dsui_3281 at 3518.438 kb on - strand, within Dsui_3281 at 3518.478 kb on - strand, within Dsui_3281 at 3518.478 kb on - strand, within Dsui_3281 at 3518.501 kb on - strand, within Dsui_3281 at 3518.516 kb on - strand, within Dsui_3281 at 3518.616 kb on + strand, within Dsui_3281 at 3518.624 kb on - strand, within Dsui_3281 at 3518.626 kb on + strand at 3518.699 kb on - strand, within Dsui_3281 at 3518.700 kb on + strand, within Dsui_3281 at 3518.708 kb on - strand, within Dsui_3281 at 3518.731 kb on + strand at 3518.731 kb on + strand at 3518.731 kb on + strand at 3518.739 kb on - strand, within Dsui_3281 at 3518.766 kb on + strand, within Dsui_3281 at 3518.879 kb on - strand at 3518.961 kb on + strand at 3518.999 kb on - strand at 3519.042 kb on + strand at 3519.048 kb on - strand at 3519.078 kb on - strand at 3519.094 kb on - strand at 3519.137 kb on - strand at 3519.159 kb on + strand at 3519.325 kb on + strand at 3519.356 kb on + strand, within Dsui_3282 at 3519.405 kb on - strand, within Dsui_3282 at 3519.415 kb on - strand, within Dsui_3282 at 3519.579 kb on - strand, within Dsui_3282 at 3519.610 kb on - strand, within Dsui_3282 at 3519.708 kb on - strand, within Dsui_3282 at 3519.710 kb on + strand at 3519.728 kb on + strand at 3519.741 kb on - strand, within Dsui_3282 at 3519.875 kb on + strand at 3519.951 kb on - strand, within Dsui_3282 at 3520.041 kb on + strand, within Dsui_3282 at 3520.049 kb on - strand, within Dsui_3282 at 3520.074 kb on + strand, within Dsui_3282 at 3520.074 kb on + strand at 3520.114 kb on + strand at 3520.156 kb on - strand, within Dsui_3282 at 3520.207 kb on + strand at 3520.245 kb on + strand, within Dsui_3282 at 3520.418 kb on - strand, within Dsui_3282 at 3520.446 kb on + strand at 3520.476 kb on + strand, within Dsui_3282 at 3520.612 kb on + strand, within Dsui_3282 at 3520.620 kb on - strand, within Dsui_3282 at 3520.635 kb on + strand at 3520.640 kb on + strand, within Dsui_3282 at 3520.659 kb on - strand, within Dsui_3282 at 3520.659 kb on - strand, within Dsui_3282 at 3520.782 kb on + strand, within Dsui_3282 at 3520.782 kb on + strand at 3520.790 kb on - strand, within Dsui_3282 at 3520.790 kb on - strand, within Dsui_3282 at 3520.790 kb on - strand, within Dsui_3282 at 3520.801 kb on + strand at 3520.877 kb on + strand, within Dsui_3282 at 3520.905 kb on - strand, within Dsui_3282 at 3520.944 kb on + strand at 3520.971 kb on + strand, within Dsui_3282 at 3520.979 kb on - strand, within Dsui_3282 at 3520.979 kb on - strand, within Dsui_3282 at 3520.979 kb on - strand, within Dsui_3282 at 3520.979 kb on - strand, within Dsui_3282 at 3520.984 kb on - strand, within Dsui_3282 at 3521.059 kb on - strand, within Dsui_3282 at 3521.059 kb on - strand, within Dsui_3282 at 3521.111 kb on - strand, within Dsui_3282 at 3521.115 kb on + strand, within Dsui_3282 at 3521.139 kb on + strand, within Dsui_3282 at 3521.179 kb on + strand, within Dsui_3282 at 3521.242 kb on + strand at 3521.273 kb on - strand, within Dsui_3282 at 3521.299 kb on - strand, within Dsui_3282 at 3521.317 kb on - strand, within Dsui_3282 at 3521.416 kb on + strand at 3521.424 kb on - strand, within Dsui_3282 at 3521.461 kb on + strand, within Dsui_3282 at 3521.609 kb on - strand, within Dsui_3282 at 3521.609 kb on - strand, within Dsui_3282 at 3521.653 kb on + strand at 3521.723 kb on - strand at 3521.786 kb on - strand at 3521.824 kb on - strand at 3521.835 kb on - strand at 3521.842 kb on + strand at 3521.873 kb on - strand at 3521.889 kb on + strand at 3521.906 kb on - strand at 3521.993 kb on - strand at 3522.003 kb on + strand at 3522.011 kb on - strand at 3522.046 kb on + strand at 3522.054 kb on - strand at 3522.054 kb on - strand at 3522.054 kb on - strand at 3522.054 kb on - strand at 3522.054 kb on - strand at 3522.054 kb on - strand at 3522.054 kb on - strand at 3522.054 kb on - strand at 3522.068 kb on - strand at 3522.073 kb on - strand at 3522.293 kb on + strand at 3522.393 kb on + strand at 3522.426 kb on + strand at 3522.537 kb on - strand at 3522.557 kb on + strand, within Dsui_3283 at 3522.614 kb on + strand, within Dsui_3283 at 3522.634 kb on - strand at 3522.794 kb on + strand, within Dsui_3283 at 3522.972 kb on + strand, within Dsui_3283 at 3522.972 kb on + strand, within Dsui_3283 at 3522.975 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Zinc 2 mM remove 3,517,987 + Dsui_3280 0.88 -0.5 3,517,987 - Dsui_3280 0.88 -1.1 3,518,079 - -0.7 3,518,107 - -1.0 3,518,137 - -0.6 3,518,137 - -1.2 3,518,154 + Dsui_3281 0.11 -0.5 3,518,171 + +0.5 3,518,179 - Dsui_3281 0.13 -1.0 3,518,179 - Dsui_3281 0.13 -1.0 3,518,181 + Dsui_3281 0.14 -0.5 3,518,183 + +0.5 3,518,207 - Dsui_3281 0.17 -1.3 3,518,249 - Dsui_3281 0.21 -1.2 3,518,292 + -0.5 3,518,416 - Dsui_3281 0.40 -1.1 3,518,438 - Dsui_3281 0.43 -1.3 3,518,478 - Dsui_3281 0.47 -0.7 3,518,478 - Dsui_3281 0.47 -0.6 3,518,501 - Dsui_3281 0.50 -0.8 3,518,516 - Dsui_3281 0.51 +0.1 3,518,616 + Dsui_3281 0.63 -0.5 3,518,624 - Dsui_3281 0.63 -1.0 3,518,626 + +0.5 3,518,699 - Dsui_3281 0.72 -1.5 3,518,700 + Dsui_3281 0.72 -0.5 3,518,708 - Dsui_3281 0.73 -2.1 3,518,731 + -1.1 3,518,731 + -0.5 3,518,731 + +0.5 3,518,739 - Dsui_3281 0.76 -0.6 3,518,766 + Dsui_3281 0.79 -1.5 3,518,879 - -1.5 3,518,961 + -1.8 3,518,999 - -0.8 3,519,042 + -1.5 3,519,048 - -1.0 3,519,078 - -1.1 3,519,094 - -0.8 3,519,137 - -0.3 3,519,159 + +0.5 3,519,325 + +0.5 3,519,356 + Dsui_3282 0.13 -0.5 3,519,405 - Dsui_3282 0.14 -1.2 3,519,415 - Dsui_3282 0.15 -1.5 3,519,579 - Dsui_3282 0.20 -1.5 3,519,610 - Dsui_3282 0.21 -0.9 3,519,708 - Dsui_3282 0.24 -1.0 3,519,710 + +0.5 3,519,728 + -0.5 3,519,741 - Dsui_3282 0.25 -2.0 3,519,875 + -0.5 3,519,951 - Dsui_3282 0.32 -1.3 3,520,041 + Dsui_3282 0.35 -0.5 3,520,049 - Dsui_3282 0.36 -1.9 3,520,074 + Dsui_3282 0.36 -0.5 3,520,074 + +0.5 3,520,114 + +0.5 3,520,156 - Dsui_3282 0.39 -1.1 3,520,207 + -1.8 3,520,245 + Dsui_3282 0.42 -1.1 3,520,418 - Dsui_3282 0.48 -0.0 3,520,446 + -0.5 3,520,476 + Dsui_3282 0.50 -1.1 3,520,612 + Dsui_3282 0.54 -1.5 3,520,620 - Dsui_3282 0.54 -1.6 3,520,635 + -0.5 3,520,640 + Dsui_3282 0.55 +0.5 3,520,659 - Dsui_3282 0.56 -2.8 3,520,659 - Dsui_3282 0.56 -1.3 3,520,782 + Dsui_3282 0.60 +0.5 3,520,782 + +0.5 3,520,790 - Dsui_3282 0.60 -0.9 3,520,790 - Dsui_3282 0.60 -1.3 3,520,790 - Dsui_3282 0.60 -1.7 3,520,801 + +0.5 3,520,877 + Dsui_3282 0.63 +2.1 3,520,905 - Dsui_3282 0.64 -1.0 3,520,944 + +0.5 3,520,971 + Dsui_3282 0.66 +0.5 3,520,979 - Dsui_3282 0.66 -1.2 3,520,979 - Dsui_3282 0.66 -0.5 3,520,979 - Dsui_3282 0.66 -1.1 3,520,979 - Dsui_3282 0.66 -2.1 3,520,984 - Dsui_3282 0.66 -0.6 3,521,059 - Dsui_3282 0.69 -0.7 3,521,059 - Dsui_3282 0.69 -1.0 3,521,111 - Dsui_3282 0.70 -2.0 3,521,115 + Dsui_3282 0.70 -1.8 3,521,139 + Dsui_3282 0.71 +0.5 3,521,179 + Dsui_3282 0.73 -1.1 3,521,242 + +0.5 3,521,273 - Dsui_3282 0.76 -1.4 3,521,299 - Dsui_3282 0.76 -1.3 3,521,317 - Dsui_3282 0.77 -0.9 3,521,416 + +0.5 3,521,424 - Dsui_3282 0.81 -1.0 3,521,461 + Dsui_3282 0.82 -1.1 3,521,609 - Dsui_3282 0.87 -1.0 3,521,609 - Dsui_3282 0.87 -0.4 3,521,653 + +0.5 3,521,723 - -1.3 3,521,786 - -0.5 3,521,824 - -1.2 3,521,835 - -1.2 3,521,842 + -1.1 3,521,873 - -1.7 3,521,889 + -0.5 3,521,906 - -1.2 3,521,993 - -0.4 3,522,003 + +0.5 3,522,011 - -0.6 3,522,046 + -1.1 3,522,054 - -2.0 3,522,054 - -2.2 3,522,054 - -2.3 3,522,054 - -1.5 3,522,054 - -1.0 3,522,054 - -2.4 3,522,054 - -1.3 3,522,054 - -1.3 3,522,068 - -2.8 3,522,073 - -1.4 3,522,293 + +0.5 3,522,393 + -0.8 3,522,426 + -1.0 3,522,537 - +0.5 3,522,557 + Dsui_3283 0.11 -0.8 3,522,614 + Dsui_3283 0.17 -0.1 3,522,634 - +0.5 3,522,794 + Dsui_3283 0.38 -0.3 3,522,972 + Dsui_3283 0.58 -0.1 3,522,972 + Dsui_3283 0.58 -0.6 3,522,975 - -0.5
Or see this region's nucleotide sequence